Locus 785

Sequence ID 3R_DroMel_CAF1
Location 2,700,285 – 2,700,382
Length 97
Max. P 0.829373
window1253

overview

Window 3

Location 2,700,285 – 2,700,382
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.53
Mean single sequence MFE -21.23
Consensus MFE -14.12
Energy contribution -14.28
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.66
SVM decision value 0.71
SVM RNA-class probability 0.829373
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2700285 97 - 27905053
-----------UCAACCAC-CGCCCACAAUC-----CACCCUCCUCCCG---CAGGACUACGCCCAUUGGC---AUCGACGACAUGGCAGAUAAAAUGUUUCAAUGUCCAAUCGGGCAAU
-----------........-...........-----.....((((....---.))))....((((((((((---((.((.(((((..........))))))).))).))))).))))... ( -22.60)
>DroPse_CAF1 39999 96 - 1
-----------U-----AC-CACCCACAGA-------ACCCUCAUCCCAGCCUCUUGCUACGCCCAUUGGCCCCAUCGACGACAUGGCAGAUAAAAUGUUUCAAUGUCCAAUCGGGCAAU
-----------.-----..-..........-------...........(((.....)))..(((((((((...(((.((.(((((..........))))))).))).))))).))))... ( -19.10)
>DroEre_CAF1 11329 102 - 1
AC------CCAUCCACCAC-CGCCCACAAUC-----CACCCUCCUCCCG---CAGGACUACGCCCAUUGGC---AUCGACGACAUGGCAGAUAAAAUGUUUCAAUGUCCAAUCGGGCAAU
..------...........-...........-----.....((((....---.))))....((((((((((---((.((.(((((..........))))))).))).))))).))))... ( -22.60)
>DroYak_CAF1 11139 97 - 1
-----------UAAACCAC-CGCCCACAAUC-----CACCCUCCUCCCG---CAUCACUGCUCCCAUUGGC---AUCGACGACAUGGCAGAUAAAAUGUUUCAAUGUCCAAUCGGGCAAU
-----------........-.((((......-----............(---((....)))....((((((---((.((.(((((..........))))))).))).))))).))))... ( -20.90)
>DroAna_CAF1 10878 114 - 1
ACCAUGCGCCAUCCACCACCCACCCACAAGCCCAUCAUCCCUCCUCUCU---UCGGACUGCGCCCAUUGGC---AUCGACGACAUGGCAGAUAAAAUGUUUCAAUGUCCAAUCGGGCAAU
.......((..(((...................................---..)))..))((((((((((---((.((.(((((..........))))))).))).))))).))))... ( -23.09)
>DroPer_CAF1 39974 96 - 1
-----------U-----AC-CACCCACAGA-------ACCCUCAUCCCAGCCUCGUGCUACGCCCAUUGGCCCCAUCGACGACAUGGCAGAUAAAAUGUUUCAAUGUCCAAUCGGGCAAU
-----------.-----..-..........-------...........(((.....)))..(((((((((...(((.((.(((((..........))))))).))).))))).))))... ( -19.10)
>consensus
___________UC_ACCAC_CACCCACAAUC_____CACCCUCCUCCCG___CAGGACUACGCCCAUUGGC___AUCGACGACAUGGCAGAUAAAAUGUUUCAAUGUCCAAUCGGGCAAU
.............................................................(((((((((....((.((.(((((..........))))))).))..))))).))))... (-14.12 = -14.28 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:06 2006