Locus 7849

Sequence ID 3R_DroMel_CAF1
Location 21,008,776 – 21,008,885
Length 109
Max. P 0.646074
window12649

overview

Window 9

Location 21,008,776 – 21,008,885
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 74.77
Mean single sequence MFE -17.38
Consensus MFE -2.57
Energy contribution -1.93
Covariance contribution -0.64
Combinations/Pair 1.42
Mean z-score -1.54
Structure conservation index 0.15
SVM decision value 0.23
SVM RNA-class probability 0.646074
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21008776 109 + 27905053
UCAACAAUCUAUUUAACAUGGUUUUUUAUUCCUACCUAGAGCUUAUCAGCUCGGUAAUUAAUAUUACAAGGAACCUAAACAUCUUAAUGCGUAACCAUGUUAAACAUUG
....((((...((((((((((((.....(((((.....(((((....))))).(((((....))))).)))))......(((....)))...)))))))))))).)))) ( -26.00)
>DroSec_CAF1 13467 106 + 1
UCAACAAUCUAUCUAACAUGGUUUUCCAUUUAUACCUACA-GUUAUCAGCUCGGUAAUUAAUAUUACAAGGAACCUAAGCAUAUAAAUGCGUAA-GAUGUUUAACAU-G
.........(((((.((..(((..(((...........((-((.....))).)(((((....)))))..))))))...((((....)))))).)-))))........-. ( -16.10)
>DroSim_CAF1 13539 107 + 1
UCAACAAUCUAUCUAACAUGGUUAUCCAUUUCUACCUACAAGUUAUCAGCUCGGUAAUUAAUAUUACAAGGAACUUAAACAUAUUAAUGCGUAA-GAUGUUUAACAU-G
................((((.(((..(((.....(((.(.(((.....))).)(((((....))))).)))..((((..(((....)))..)))-))))..))))))-) ( -14.20)
>DroEre_CAF1 13545 97 + 1
AGAGCUAUCUAUUUAAUAUGGUUUCCCAAUUAUACCUUGAAUUUAGCAGCUCGGUAGUAAAUAUUACAAGAAACCUAAACUUCUCA-----------AACCUAAACU-U
.(((((....(((((((((((((....)))))))..)))))).....)))))(((.(((.....))).((((........))))..-----------.)))......-. ( -13.60)
>DroYak_CAF1 15357 107 + 1
ACAACUAUAUAUGCGAUAUGGUUUUCCAUUUAUAACUUGAAUUUAGCAGCUUGUCAAUAAAUAUUACAAGAAAACUAAACUUCCUAAUGAGUUA-CAAGUUUUACAU-G
..((((((((.....))))))))...(((.((.((((((....(((...(((((.(((....))))))))....)))(((((......))))).-)))))).)).))-) ( -17.00)
>consensus
UCAACAAUCUAUCUAACAUGGUUUUCCAUUUAUACCUAGAAGUUAUCAGCUCGGUAAUUAAUAUUACAAGGAACCUAAACAUCUUAAUGCGUAA_CAUGUUUAACAU_G
..((((...........((((....))))...((((................)))).........................................))))........ ( -2.57 =  -1.93 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:18 2006