Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,003,827 – 21,003,981 |
Length | 154 |
Max. P | 0.913870 |
Location | 21,003,827 – 21,003,944 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.61 |
Mean single sequence MFE | -35.56 |
Consensus MFE | -26.76 |
Energy contribution | -26.80 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.16 |
Mean z-score | -2.21 |
Structure conservation index | 0.75 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21003827 117 - 27905053 GGACAUUGCAUUAACCAAAGUCUGGACAACAGAUGUCUGGGGUUUGGU---CCCCUGACAAUAUUAGUUCGGAAAUGGAGGCGUAACAUUCCGGGUGAACUGCAGAUGUCACUAAAAUUC .(((((((((...(((....(((((((......((((.((((......---)))).))))......)))))))..(((((........))))))))....)))).))))).......... ( -37.70) >DroSec_CAF1 8379 103 - 1 GGACAUUGCAUUAACCAAAGUCUGGACAACAGAUGUCUGGGGUUUGGUGG-----------------UUCGGAAAUGGAGGCGUAACAUUCCGGGUGAAGUGCAGAUGUCACUAAAAUUC .(((((((((((.((((((.((..((((.....))))..)).)))))).(-----------------..(((((.((.........)))))))..)..)))))).))))).......... ( -37.60) >DroSim_CAF1 8430 120 - 1 GGACAUUGCAUUAACCAAAGUCUGGACAACAGAUGUCUGGGGUUUGGUGGUCCCCUGACAAUAUGAGUUCGGAAAUGGAGGCGUAACAUUCCGGGUGAAGUGCAGAUGUCACUAAAAUUC .(((((((((((.((((((.((..((((.....))))..)).))))))..(((((.((...((((..((((....))))..))))....)).))).)))))))).))))).......... ( -40.00) >DroEre_CAF1 8508 117 - 1 GGACAUUGCAUUAACCCAACGCUGGACAACAGAUGUCUGGGGUUUGGU---CCCCUGACAAUAUAAGUUCGGAAAUGGGGGCGUAACAUUCCGGGUGAACUGCAGAUGUCACCAAAAUUC .(((((((((...((((....((((((......((((.((((......---)))).))))......))))))....((((........))))))))....)))).))))).......... ( -38.40) >DroYak_CAF1 9348 112 - 1 GGACAUUGCAUUAACCGAACUCUGGACAACAGAUGUCUGGACUUUGGU---CCCCUGACAAUAUAAU-----AUAAGGAGGCGUUACAUUCCGGCUGAACUACAGAUGUUACUAAAAUUC ....((((((...((((((.((..((((.....))))..)).))))))---....)).)))).((((-----((..((((........))))..(((.....)))))))))......... ( -24.10) >consensus GGACAUUGCAUUAACCAAAGUCUGGACAACAGAUGUCUGGGGUUUGGU___CCCCUGACAAUAUAAGUUCGGAAAUGGAGGCGUAACAUUCCGGGUGAACUGCAGAUGUCACUAAAAUUC .(((((((((...((((((.((..((((.....))))..)).))))))............................((((........))))........)))).))))).......... (-26.76 = -26.80 + 0.04)
Location | 21,003,867 – 21,003,981 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.20 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -15.66 |
Energy contribution | -16.62 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.10 |
Mean z-score | -1.73 |
Structure conservation index | 0.61 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563062 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21003867 114 - 27905053 CGAAGCUUACAAAAAUUGGUAAAG---AAAAUAAACAAAUGGACAUUGCAUUAACCAAAGUCUGGACAACAGAUGUCUGGGGUUUGGU---CCCCUGACAAUAUUAGUUCGGAAAUGGAG ....((.........(((......---........))).........)).....(((...(((((((......((((.((((......---)))).))))......)))))))..))).. ( -24.91) >DroSec_CAF1 8419 102 - 1 CGAAGCUUACAGAAAUGGGUAAAAA-AAAAAUAAACAAAUGGACAUUGCAUUAACCAAAGUCUGGACAACAGAUGUCUGGGGUUUGGUGG-----------------UUCGGAAAUGGAG ((((.(...((....))........-...........................((((((.((..((((.....))))..)).))))))).-----------------))))......... ( -23.40) >DroSim_CAF1 8470 120 - 1 CGAAGCUUAUAAAAAUGGUUAAAAAAAAAAAUAAACAAAUGGACAUUGCAUUAACCAAAGUCUGGACAACAGAUGUCUGGGGUUUGGUGGUCCCCUGACAAUAUGAGUUCGGAAAUGGAG ((((.((((((......(((.............)))....((((.........((((((.((..((((.....))))..)).)))))).))))........))))))))))......... ( -28.32) >DroEre_CAF1 8548 109 - 1 CGAAGCUUACAGAAAUGGGUAAA--------AAAGCAAAUGGACAUUGCAUUAACCCAACGCUGGACAACAGAUGUCUGGGGUUUGGU---CCCCUGACAAUAUAAGUUCGGAAAUGGGG .........((....))......--------...((((.......)))).....((((...((((((......((((.((((......---)))).))))......))))))...)))). ( -30.40) >DroYak_CAF1 9388 108 - 1 CGAAGCUUACAAAAACGGCUGAAAA-UA---AAAGCAAAUGGACAUUGCAUUAACCGAACUCUGGACAACAGAUGUCUGGACUUUGGU---CCCCUGACAAUAUAAU-----AUAAGGAG .....((((........(((.....-..---..)))........((((((...((((((.((..((((.....))))..)).))))))---....)).)))).....-----.))))... ( -21.30) >consensus CGAAGCUUACAAAAAUGGGUAAAAA__AAAAUAAACAAAUGGACAUUGCAUUAACCAAAGUCUGGACAACAGAUGUCUGGGGUUUGGU___CCCCUGACAAUAUAAGUUCGGAAAUGGAG ((((.................................((((.......)))).((((((.((..((((.....))))..)).))))))...................))))......... (-15.66 = -16.62 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:16 2006