Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,999,116 – 20,999,211 |
Length | 95 |
Max. P | 0.586307 |
Location | 20,999,116 – 20,999,211 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -25.42 |
Consensus MFE | -16.66 |
Energy contribution | -17.78 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.67 |
Structure conservation index | 0.66 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20999116 95 + 27905053 GCAAUUCAAAUACGCACAGCUCUAGUUUCGGCUUUGGGAUAGGAUUUACCGGUAUAAGCCAAGAUCUUUCAGGAGGAUCUGUGACUAGGUAUGCA .............(((..((.((((((.((((((....((.((.....)).))..))))).((((((((...))))))))).)))))))).))). ( -25.40) >DroSec_CAF1 3760 95 + 1 GCAAUUCAAAUACGCACAGCUCUAGUUUCGGCUUUGGGAUAGGAUUUGCCGGUAUAAGCCAAGAUCUUUCAGGAGGAUCUGAGACUAGGUAUGCA .............(((..((.(((((((((((((....((.((.....)).))..))))).((((((((...)))))))))))))))))).))). ( -29.70) >DroSim_CAF1 3793 95 + 1 GCAAAGCAAAUACGCACAGCUCUAGUUUCGGCUUUGGGACAGGAUUUGGCGGUAUAAGCCAAGAUCUUUCAGAAGGAUCUGAGACUAGGUAUGCA (((..((......))...((.((((((((((((((..((.(((.((((((.......)))))).))).))..))))..)))))))))))).))). ( -32.20) >DroEre_CAF1 3809 84 + 1 GAAAUUCAAAUACACAGAGCUCUAGUUUCGGUUUG-GGAUAGGAUUU---GGUAUAAGCCUAGAUCUGUCA---GGAUCUAAGACUGGGUA---- ..................((.(((((((..(.((.-.(((((.((((---(((....))).))))))))).---.)).)..))))))))).---- ( -20.30) >DroYak_CAF1 4559 79 + 1 AAAAUUCAAAUGCACAGAGCUCUGGUUUCGGCUUU-G-----GAUUU---GGUAUAAGCCUAGAUCUUGCA---GGAUCUAUGUGUAGGUA---- .(((((((((.((.(..(((....)))..))))))-)-----)))))---(((....)))(((((((....---)))))))..........---- ( -19.50) >consensus GCAAUUCAAAUACGCACAGCUCUAGUUUCGGCUUUGGGAUAGGAUUU__CGGUAUAAGCCAAGAUCUUUCAG_AGGAUCUGAGACUAGGUAUGCA ..................((.(((((((((((((.....................))))).(((((((.....)))))))))))))))))..... (-16.66 = -17.78 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:14 2006