| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,995,749 – 20,995,859 |
| Length | 110 |
| Max. P | 0.839596 |
| Location | 20,995,749 – 20,995,859 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.66 |
| Mean single sequence MFE | -31.04 |
| Consensus MFE | -21.77 |
| Energy contribution | -21.50 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20995749 110 + 27905053 CCUCCUGGUGUUUAUAGGGCACCAGAUAUGGAGCCAGGAAAUCGGCGGGCUUGCUGGCUAUUUCUUUUUUAAGUUCCUCCUCUUCUUCAAACUGGAUAAAAUGCA-UAUAA ....((((((((.....))))))))(((((.((((((.((..(....)..)).))))))..................(((.............))).......))-))).. ( -27.72) >DroSec_CAF1 425 110 + 1 CCUCCUGGUGCUUAUAGGGCACCAGAUAUGGGGCCAAGAAAUCAGCGGGCUUGCUGGCUAUUUCCUUUUUAAGUUCCUCCUCCUCCUCAAACUUUAUAAUAUACA-UAUUA ....((((((((.....))))))))...(((((....(((((.(((.((....)).))))))))((.....))...........)))))................-..... ( -26.10) >DroSim_CAF1 423 110 + 1 CCUCCUGGUGCUUAUAGGGCACCAGAUAUGGGGCCAAGAAAUCAGCGGGCUUGCUGGCUAUUUCCUUUUUAAGUUCCUCCUCCUCCUCAAACUGGAUAAGAUACA-UAAUA ((((((((((((.....))))))))....))))....(((((.(((.((....)).))))))))........((..((..(((..........)))..))..)).-..... ( -29.60) >DroEre_CAF1 421 110 + 1 CCUCCUGGUGCUUGUAGGGCACCAGAUAUGGAGCGAGGAAAUCGGCGGGCUUGCUGGCUAUUUCCUUUUUAAGCUCCUCCUCCUCCUCAAACUGAAUGGUGGACA-UUUUG ....((((((((.....))))))))....(((((((((((((.(((.((....)).))))))))))).....)))))(((.((...((.....))..)).)))..-..... ( -41.90) >DroWil_CAF1 417 110 + 1 CCUCUUGAUGCUUAUAGGGAAUGAGGUAUGGAGCCAAGAAAUCAGCUGGCUUACUAGCAACCUCUCUUUUGUGCUCUUCUUCCUCCUCAAACUGCAAAUUUCAUA-UGAUG ........(((.....((((..((((...((((((((((.....(((((....)))))........))))).))))).)))).))))......))).........-..... ( -24.42) >DroAna_CAF1 536 111 + 1 CGUCCUGGUGCUUGUAAGGCACCAAAUACGGAGCCAAGAAAUCAGCUGGCUUGCUGGCUAUUUCCCUCUUGAGUUCCUCCUCCUCCUCAAACUAACAAGGACACAAUUUCA .(((((((((((.....))))))......((((((((((((..(((..(....)..)))..))...))))).)))))....................)))))......... ( -36.50) >consensus CCUCCUGGUGCUUAUAGGGCACCAGAUAUGGAGCCAAGAAAUCAGCGGGCUUGCUGGCUAUUUCCUUUUUAAGUUCCUCCUCCUCCUCAAACUGAAUAAUAUACA_UAUUA ....((((((((.....))))))))....(((((...(((((.(((.((....)).))))))))........))))).................................. (-21.77 = -21.50 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:13 2006