Locus 7843

Sequence ID 3R_DroMel_CAF1
Location 20,994,269 – 20,994,389
Length 120
Max. P 0.994654
window12642

overview

Window 2

Location 20,994,269 – 20,994,389
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 97.39
Mean single sequence MFE -37.65
Consensus MFE -35.23
Energy contribution -35.40
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.94
SVM decision value 2.50
SVM RNA-class probability 0.994654
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20994269 120 - 27905053
UCCCUUGUCCGCCUACCGUACGUUAGCUUCGCUGAAAAUUUGCUCGUGGCAUGAACACAUGUGGCGUAAUUUCGUCGCAGAUUUUUGUUCGCUAACUGGACAAGAAGAUUUCGUGCACUG
...(((((((((.....))..((((((...((.((((((((((.....(((((....)))))((((......))))))))))))))))..)))))).)))))))................ ( -35.80)
>DroSim_CAF1 30306 120 - 1
UCCCUUGUCCGCCUACCGUACGUUAGCUUCGCUGAAAAUUUGCUCGUGGCAUGAACACAUGUGGCGUAAUUUCGUCGCAGAUUUUUGUUCGCUAACUGGACAAGAAGAUUUCGUGCACUG
...(((((((((.....))..((((((...((.((((((((((.....(((((....)))))((((......))))))))))))))))..)))))).)))))))................ ( -35.80)
>DroEre_CAF1 37054 120 - 1
UCCCUUGUCCGCCUACCGUACGUUAGCUUCGCUGAAAAUUUGCUCGUGGCAUGAACACAUGUGGCGUAAUUUCGUCGCAGAUUUUUGUUCGCUAACUGGACAAGGAGAUUUCGUGCACUG
((((((((((((.....))..((((((...((.((((((((((.....(((((....)))))((((......))))))))))))))))..)))))).)))))))).))............ ( -39.70)
>DroWil_CAF1 46471 119 - 1
UCCCUUGUCCGCCAUCCGUCCGUUAGCAUCGCUGAAAAUUUGCUCGUGGCAUGAACACAUGUGGCGUAAUUUCGUCGCAGAUU-UUGUUCGCUAACUGGACAAGAAGAUUUUGUACACUG
...((((((((((((..((...(((((...)))))......))..)))))..(((((..(((((((......)))))))....-.))))).......)))))))................ ( -35.80)
>DroYak_CAF1 36662 120 - 1
UCCCUUGUCCGCCUACCGUACGUUAGCUUCGCUGAAAAUUUGCUCGUGGCAUGAACACAUGUGGCGUAAUUUCGUCGCAGAUUUUUGUUCGCUAACUGGACAAGGAGAUUUCGUGCACUG
((((((((((((.....))..((((((...((.((((((((((.....(((((....)))))((((......))))))))))))))))..)))))).)))))))).))............ ( -39.70)
>DroAna_CAF1 35799 120 - 1
UCCCUUGUCCGCCUACCGUCCGUUAGCUUCGCUGAAAAUUUGCUCGUGGCAUGAACACAUGUGGCGUAAUUUCGUCGCAGAUUUUUGUUCGCUAACUGGACAAGGAGAUUUCGUGCACUG
((((((((((((.....))..((((((...((.((((((((((.....(((((....)))))((((......))))))))))))))))..)))))).)))))))).))............ ( -39.10)
>consensus
UCCCUUGUCCGCCUACCGUACGUUAGCUUCGCUGAAAAUUUGCUCGUGGCAUGAACACAUGUGGCGUAAUUUCGUCGCAGAUUUUUGUUCGCUAACUGGACAAGAAGAUUUCGUGCACUG
...(((((((((.....))..((((((...((.((((((((((.....(((((....)))))((((......))))))))))))))))..)))))).)))))))................ (-35.23 = -35.40 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:11 2006