Locus 7841

Sequence ID 3R_DroMel_CAF1
Location 20,993,685 – 20,993,803
Length 118
Max. P 0.986652
window12640

overview

Window 0

Location 20,993,685 – 20,993,803
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.62
Mean single sequence MFE -30.00
Consensus MFE -26.91
Energy contribution -27.43
Covariance contribution 0.53
Combinations/Pair 1.03
Mean z-score -2.03
Structure conservation index 0.90
SVM decision value 2.05
SVM RNA-class probability 0.986652
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20993685 118 - 27905053
UAAGUACAGUUGUGUAAAUACACUAGCGGCCAACGCCGCGGCCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUAC--ACA
...((((.((((...(((((((((.(.((((........))))).))....)))))))...))))..........((((((((....((....)).....)))))))).))))..--... ( -30.90)
>DroSim_CAF1 29655 118 - 1
UAAGUACAGUUGUGUAAAUACACUAGCGGCCAACGCCGCGGCCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUAC--ACA
...((((.((((...(((((((((.(.((((........))))).))....)))))))...))))..........((((((((....((....)).....)))))))).))))..--... ( -30.90)
>DroEre_CAF1 36291 118 - 1
UAAGUACAGUUGUGUAAAUACACUAGCGGCCAACGCCGCGGCCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUAC--ACA
...((((.((((...(((((((((.(.((((........))))).))....)))))))...))))..........((((((((....((....)).....)))))))).))))..--... ( -30.90)
>DroWil_CAF1 45893 118 - 1
UAAGUACAGUUGUGCAAAUACACUAGCGGACAGCGUCGCGGCCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCGCAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAAAGUAC--ACA
...((((.((((...(((((((((.(.((...((...))..))).))....)))))))...))))..........((((((((....((....)).....))))))))...))))--... ( -27.40)
>DroYak_CAF1 35903 120 - 1
UAAGUACAGUUGUGUAAAUACACUAGCGGCCAACGCCGCGGCCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUACACACA
...((((.((((...(((((((((.(.((((........))))).))....)))))))...))))..........((((((((....((....)).....)))))))).))))....... ( -30.90)
>DroAna_CAF1 35097 112 - 1
UAAGUACAGUUGUGUAAAUACACUAGCGGC------CGCGGCCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUAC--ACA
...((((.((((...(((((((((.(.(((------....)))).))....)))))))...))))..........((((((((....((....)).....)))))))).))))..--... ( -29.00)
>consensus
UAAGUACAGUUGUGUAAAUACACUAGCGGCCAACGCCGCGGCCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUAC__ACA
...((((.((((...(((((((((.(.((((........))))).))....)))))))...))))..........((((((((....((....)).....)))))))).))))....... (-26.91 = -27.43 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:09 2006