Locus 7840

Sequence ID 3R_DroMel_CAF1
Location 20,992,664 – 20,992,784
Length 120
Max. P 0.823055
window12639

overview

Window 9

Location 20,992,664 – 20,992,784
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 98.61
Mean single sequence MFE -28.92
Consensus MFE -27.66
Energy contribution -27.55
Covariance contribution -0.11
Combinations/Pair 1.03
Mean z-score -1.00
Structure conservation index 0.96
SVM decision value 0.69
SVM RNA-class probability 0.823055
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20992664 120 + 27905053
AUGCUGACACGUUCGCUGUCCGUCGCCGGGCGUUCGAAUACAAAAUAAAUAUCCAAUAUAUGCCCAUGUGGGUGUGUAUCCUGUUUCUGGCAUAUAUUAUAAGUGGAAUAGAAAAAUAAA
...(((.((((((((.((((((....))))))..)))))...............((((((((((...(..((.......))..)....))))))))))....)))...)))......... ( -30.20)
>DroSim_CAF1 28646 120 + 1
AUGCUGACACGUUCGCUGUCCGUCGCCGGGCGUUCGAAUACAAAAUAAAUAUCCAAUAUAUGCCCAUGUGGGUGUGUAUCCUGUUUCUGGCAUAUAUUAUAAGUGGAAUAGAAAAAUAAA
...(((.((((((((.((((((....))))))..)))))...............((((((((((...(..((.......))..)....))))))))))....)))...)))......... ( -30.20)
>DroEre_CAF1 35293 120 + 1
AUGCUGACACGUUCGCUGUCCGUCGCCGGGCGCUCGAAUACAAAAUAAAUAUCCAAUAUAUGCCCAUGUGGGUGUGUAUCCUGUUUCUGGCAUAUAUUAUAAGUGGAAUAGAAAAAUAAA
...(((.((((((((.((((((....))))))..)))))...............((((((((((...(..((.......))..)....))))))))))....)))...)))......... ( -30.20)
>DroWil_CAF1 45152 120 + 1
AUGCUGACACGUUCGCUGUCCGUAGCCGCGCGUUCGAAUACAAAAUAAAUAUCCAAUAUAUGCUCAUGUGAGUGUGUAUCCUGUUUCUGGCAUAUAUUAUAAGUGGAAUAGAAAAAUAAA
.(((.((((.(....))))).))).((((..((......))...(((((((((((((((((((((....))))))))))........))).)))).))))..)))).............. ( -22.50)
>DroYak_CAF1 34838 120 + 1
AUGCUGACACGUUCGCUGUCCGUCGCCGGGCGUUCGAAUACAAAAUAAAUAUCCAAUAUAUGCCCAUGUGGGUGUGUAUCCUGUUUCUGGCAUAUAUUAUAAGUGGAAUAGAAAAAUAAA
...(((.((((((((.((((((....))))))..)))))...............((((((((((...(..((.......))..)....))))))))))....)))...)))......... ( -30.20)
>DroAna_CAF1 33961 120 + 1
AUGCUGACACGUUCGCUGUCCGUCGCCGGGCGUUCGAAUACAAAAUAAAUAUCCAAUAUAUGCCCAUGUGGGUGUGUAUCCUGUUUCUGGCAUAUAUUAUAAGUGGAAUAGAAAAAUAAA
...(((.((((((((.((((((....))))))..)))))...............((((((((((...(..((.......))..)....))))))))))....)))...)))......... ( -30.20)
>consensus
AUGCUGACACGUUCGCUGUCCGUCGCCGGGCGUUCGAAUACAAAAUAAAUAUCCAAUAUAUGCCCAUGUGGGUGUGUAUCCUGUUUCUGGCAUAUAUUAUAAGUGGAAUAGAAAAAUAAA
(((((((.(((((((.((((((....))))))..)))))................((((((((((....))))))))))...)).)).)))))........................... (-27.66 = -27.55 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:08 2006