Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,696,498 – 2,696,609 |
Length | 111 |
Max. P | 0.594474 |
Location | 2,696,498 – 2,696,609 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -18.23 |
Consensus MFE | -13.28 |
Energy contribution | -14.07 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.21 |
Mean z-score | -1.75 |
Structure conservation index | 0.73 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2696498 111 - 27905053 ACCUAUAGGUGAUGCUGUAUACUUGCUUUUAAGUAGGACUAAAGUAUACAGAAAAUAUUUAAUAAAAACGCACU----CAUGAAAAAUCUAA-AAAUUAAUGAAUCAAGGGAAAAU .(((.((((((...((((((((((.(((......)))....))))))))))....))))))............(----(((...........-......))))....)))...... ( -18.13) >DroSec_CAF1 6588 115 - 1 ACCUAUAGGUGAUGCUGUAUGCUCACAUUUAAAAAGAACAAGAGUAUAUA-AAAAUAUUACAUAAAAACAGACUUAGUCAUAGUAAACAAAACAAAUUAUGGAAUCAAGGGUAAAU ((((....((((((.(((((((((.................)))))))))-....))))))................(((((((...........)))))))......)))).... ( -16.93) >DroSim_CAF1 6600 116 - 1 ACCUAUAGGUGAUGCUGUAUGCUCACAUUUAAAAAGAACAAGAGUAUAUAGAAAAUAUUACAUAAAAACAGACUUAGUCAUAGUAAAUAAAACAAAUUAUGGAAUCAAGGGUAAAU ((((....((((((((((((((((.................))))))))))....))))))................(((((((...........)))))))......)))).... ( -19.63) >consensus ACCUAUAGGUGAUGCUGUAUGCUCACAUUUAAAAAGAACAAGAGUAUAUAGAAAAUAUUACAUAAAAACAGACUUAGUCAUAGUAAAUAAAACAAAUUAUGGAAUCAAGGGUAAAU .(((....((((((((((((((((...(((.....)))...))))))))))....))))))................(((((((...........))))))).....)))...... (-13.28 = -14.07 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:05 2006