Locus 7836

Sequence ID 3R_DroMel_CAF1
Location 20,986,808 – 20,986,913
Length 105
Max. P 0.651878
window12630

overview

Window 0

Location 20,986,808 – 20,986,913
Length 105
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 91.85
Mean single sequence MFE -35.33
Consensus MFE -29.58
Energy contribution -29.70
Covariance contribution 0.12
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.84
SVM decision value 0.25
SVM RNA-class probability 0.651878
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20986808 105 + 27905053
-------------GGGACAGUUCUACAACUACAACUACCACUUCCACCACGACGAACAAGCAGUGGUAAUUCGCAGGCAACUUCUGGGCAACCGGGCCGAGGAUGUGACAAGCUCCUU
-------------((..(((((....))))........(((.((((((((..(......)..)))))...((((((....)).((((....))))).)))))).)))....)..)).. ( -29.40)
>DroSec_CAF1 27394 105 + 1
-------------GGGGCAGUUCUACAACUACAACUACCACUUCUACCACGACGAACAAGCAGUGGUAAUUCGCAGGCAACUUCUGGGCAACCGGGCCGAGGAUGUGACAAGCUCCUU
-------------(((((((((....))))........(((...((((((..(......)..))))))((((...(((.....((((....)))))))..)))))))....))))).. ( -33.10)
>DroEre_CAF1 29324 108 + 1
----------GAGGGGGCAGUUCUACAACUACAACUACCACUUCUACCACGACGAACAAGCAGUGGUAAUUCGCAGGCAACUUCUGGGCAACCGGGCCGAGGAUGUGACAAGCUCCUU
----------.(((((((((((....))))........(((...((((((..(......)..))))))((((...(((.....((((....)))))))..)))))))....))))))) ( -34.50)
>DroYak_CAF1 28695 118 + 1
GUGUGUGGUAGGGGAGGUAGUUCUACAACUACAACUACCACUUCUACCACGACGAACAAGCAGUGGUAAUUCGCAGGCAACUUCUGGGCAACCGGGCCGAGGAUGUGACAAGCUCCUU
((.(((((((((((.(((((((.((....)).))))))).))))))))))))).........((((....)))).(((.....((((....)))))))(((((.((.....))))))) ( -44.30)
>consensus
_____________GGGGCAGUUCUACAACUACAACUACCACUUCUACCACGACGAACAAGCAGUGGUAAUUCGCAGGCAACUUCUGGGCAACCGGGCCGAGGAUGUGACAAGCUCCUU
.............(((((((((....))))........(((.((((((((..(......)..)))))...((((((....)).((((....))))).)))))).)))....))))).. (-29.58 = -29.70 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:58 2006