Locus 7835

Sequence ID 3R_DroMel_CAF1
Location 20,985,967 – 20,986,058
Length 91
Max. P 0.915241
window12629

overview

Window 9

Location 20,985,967 – 20,986,058
Length 91
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.67
Mean single sequence MFE -31.15
Consensus MFE -20.62
Energy contribution -20.32
Covariance contribution -0.30
Combinations/Pair 1.25
Mean z-score -1.82
Structure conservation index 0.66
SVM decision value 1.10
SVM RNA-class probability 0.915241
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20985967 91 + 27905053
GCGGUUGUGUUUCCC-AACUUGAGAACAUGUCCAGAUCAAGUUGUCGGAAAAAGCGACUAUCAACUCAACGU-GGCUGGGCAACCACCGCAGC---------------------------
((((((((.((((((-(((((((.............))))))))..)))))..))))))...........((-((.(((....))))))).))--------------------------- ( -31.52)
>DroSec_CAF1 26558 91 + 1
GCGGUUGUGUUUCCC-AACUUGAGAACAUGUCCAGAUCAAGUUGUCGGAAAAAGCGACUAUCAACUCAACGU-GGCUGGGCAGCCACCGCAGC---------------------------
((((((((.((((((-(((((((.............))))))))..)))))..)))))............((-((((....)))))))))...--------------------------- ( -31.42)
>DroEre_CAF1 28459 91 + 1
GCGGUUGUGUUUCCC-AACUUGAGAACAUGUCCAGAUCAAGUUGUCGGAAAAAGCGACUAUCAACUCAACGU-GGCUGGGCAACCACCGCAGC---------------------------
((((((((.((((((-(((((((.............))))))))..)))))..))))))...........((-((.(((....))))))).))--------------------------- ( -31.52)
>DroWil_CAF1 37414 102 + 1
GUUUCUGUGUUUU-U-AACUUGAGAACAUGCCCAGAUCAAGUUGUCGGAAACAGCGACUUUCAACUUAACGG-AGCUGAAU-UUUACCACAAC--------------GACGAAUGCUACC
(((((.(((((((-(-.....)))))))).....((..(((((((.(....).)))))))))........))-))).....-...........--------------............. ( -18.70)
>DroYak_CAF1 27797 91 + 1
GCGGUUGUGUUUCCC-AACUUGAGAACAUGUCCAGAUCAAGUUGUCGGAAAAAGCGACUACCAACGCAACGU-GGCUGGGCAACCGCCGCAGC---------------------------
((((((((.((((((-(((((((.............))))))))..)))))..))))))...........((-(((.((....))))))).))--------------------------- ( -33.02)
>DroAna_CAF1 26439 118 + 1
GCGGUUGUGUUUUCCAAACUUGAGAACAUGUCCAGCUCAAGUUGUCGGAAAAAGCGACUAUCAACUGGACGUUGGUUGGGUUUUCACCGCAACUGUUAGAGGAGCAGGACGA--GCUGGA
.(((((((((((((.......))))))))((((.((((.(((((.(((..(((((..(.((((((.....)))))).).)))))..)))))))).......)))).)))).)--)))).. ( -40.70)
>consensus
GCGGUUGUGUUUCCC_AACUUGAGAACAUGUCCAGAUCAAGUUGUCGGAAAAAGCGACUAUCAACUCAACGU_GGCUGGGCAACCACCGCAGC___________________________
((((((((..((((..(((((((.............)))))))...))))...))))))..............((.(((....))))))).............................. (-20.62 = -20.32 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:56 2006