Locus 7833

Sequence ID 3R_DroMel_CAF1
Location 20,984,738 – 20,984,832
Length 94
Max. P 0.527205
window12626

overview

Window 6

Location 20,984,738 – 20,984,832
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.63
Mean single sequence MFE -20.70
Consensus MFE -8.94
Energy contribution -8.72
Covariance contribution -0.22
Combinations/Pair 1.14
Mean z-score -2.10
Structure conservation index 0.43
SVM decision value -0.01
SVM RNA-class probability 0.527205
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20984738 94 + 27905053
AAUAACAAGCAUUUUUAUUUUAAUACCGACACUUAAUAUAA-ACCUCAUGGAGCCACAAAAUCACGCUCCAUUUGUUCGGG----------------CAAGUGCAG------GG---CAU
........(((((........))).((..(((((..(...(-((...(((((((...........)))))))..)))..).----------------.)))))..)------))---).. ( -17.60)
>DroPse_CAF1 39573 97 + 1
AGUAACAAACAAUUUUAUUUUAAUAGUGCCACUUUAUAUAAAACCUCGUGGAGCCACAACAUCACGCUCCAUUUGUUCAAG--------------------UCCAGACUACGGG---CAC
.........................(((((...........(((...(((((((...........)))))))..)))..((--------------------(....)))...))---))) ( -17.70)
>DroWil_CAF1 35745 96 + 1
AAUAACAAGCAUUUUUAUUUUAAUACCGACACUUAAUAUGA-ACUUGAUGGAGCCACAAAAUCACGCUCCAUUUGUUCAAG----------------CA----CCGUCUGCAGC---UAC
.......(((............................(((-((..((((((((...........)))))))).))))).(----------------((----.....))).))---).. ( -21.50)
>DroYak_CAF1 26447 94 + 1
AAUAACAAGCAUUUUUAUUUUAAUACCGACACUUAAUAUAA-ACCUCAUGGAGCCACAAAAUCACGCUCCAUUUGUUCGGG----------------CAAGUGCAG------GG---CAU
........(((((........))).((..(((((..(...(-((...(((((((...........)))))))..)))..).----------------.)))))..)------))---).. ( -17.60)
>DroAna_CAF1 25176 113 + 1
AAUAACAAGCAUUUUUAUUUUAAUACCGACACUUAAUAUAA-ACCUCAUGGAGCCACAAAAUCACGCUCCAUUUGUUCAGGGCCCCGACUCCGGAGCCAAGUGCAG------GAGCCCAU
.........................((..(((((......(-((...(((((((...........)))))))..)))...(((.(((....))).))))))))..)------)....... ( -26.90)
>DroPer_CAF1 38179 97 + 1
AGUAACAAACAAUUUUAUUUUAAUAGUGCCACUUUAUAUAAAACCUCGUGGAGCCACAACAUCACGCUCCAUUUGUUCAAG--------------------CCCGGACUACGGG---CAC
.(.(((((....((((((..(((.((.....))))).))))))....(((((((...........)))))))))))))..(--------------------((((.....))))---).. ( -22.90)
>consensus
AAUAACAAGCAUUUUUAUUUUAAUACCGACACUUAAUAUAA_ACCUCAUGGAGCCACAAAAUCACGCUCCAUUUGUUCAAG________________CA__UGCAG______GG___CAC
...............................................(((((((...........)))))))................................................ ( -8.94 =  -8.72 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:53 2006