Locus 7827

Sequence ID 3R_DroMel_CAF1
Location 20,973,624 – 20,973,715
Length 91
Max. P 0.989725
window12617 window12618

overview

Window 7

Location 20,973,624 – 20,973,715
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 93.63
Mean single sequence MFE -24.57
Consensus MFE -22.15
Energy contribution -22.78
Covariance contribution 0.63
Combinations/Pair 1.06
Mean z-score -3.72
Structure conservation index 0.90
SVM decision value 2.18
SVM RNA-class probability 0.989725
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20973624 91 + 27905053
UUAUAUAUUCAAAAUUAUAUGUGUUACAAACGCGUGCACAUAGUUUCUGCCACAUGGCCGCAGAUUAUAUAUACAUACCUUUGGAUAUAUU
..(((((((((((....(((((((.....)))))))...((((((((.(((....))).).)))))))...........))))))))))). ( -21.00)
>DroSec_CAF1 13841 87 + 1
UUAUAUAUUCAAAAUUAUAUGUGUUACAAGCGCGUGCACAUAGUUGCUGCCACAUGGCCGCAGAUUAUGUAU----ACCUUUGGAUAUACU
...((((((((((....(((((((.....))))))).((((((((((.(((....))).))).)))))))..----...)))))))))).. ( -27.40)
>DroSim_CAF1 13817 87 + 1
UUAUAUAUUCAAAAUUAUAUGUGUUACAAGCGCGUGCACAUAGUUUCUGCCACAUGGCCGCAGAUUAUGUAU----ACCUUUGGAUAUAUU
..(((((((((((....(((((((.....))))))).((((((((((.(((....))).).)))))))))..----...))))))))))). ( -25.90)
>DroYak_CAF1 14611 87 + 1
UUAUAUAUUCAAAAUUAUAUGUGUUACAAGCGCGUGCACAUAGUUUCAGCCACAUGGCCGCAGAUUAUAUAU----ACCUUUGAAUAUAUG
.((((((((((((..(((((((((.((......))))))((((((((.(((....))).).)))))))))))----)..)))))))))))) ( -24.00)
>consensus
UUAUAUAUUCAAAAUUAUAUGUGUUACAAGCGCGUGCACAUAGUUUCUGCCACAUGGCCGCAGAUUAUAUAU____ACCUUUGGAUAUAUU
..(((((((((((....(((((((.....))))))).((((((((((.(((....))).).))))))))).........))))))))))). (-22.15 = -22.78 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 20,973,624 – 20,973,715
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 93.63
Mean single sequence MFE -21.32
Consensus MFE -16.47
Energy contribution -16.79
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -2.65
Structure conservation index 0.77
SVM decision value 0.58
SVM RNA-class probability 0.787549
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20973624 91 - 27905053
AAUAUAUCCAAAGGUAUGUAUAUAUAAUCUGCGGCCAUGUGGCAGAAACUAUGUGCACGCGUUUGUAACACAUAUAAUUUUGAAUAUAUAA
.((((((.((((((..((((((((...(((((.((...)).)))))...))))))))..)..(((((.....)))))))))).)))))).. ( -23.20)
>DroSec_CAF1 13841 87 - 1
AGUAUAUCCAAAGGU----AUACAUAAUCUGCGGCCAUGUGGCAGCAACUAUGUGCACGCGCUUGUAACACAUAUAAUUUUGAAUAUAUAA
.((((((.(((((((----.((((((...(((.(((....))).)))..)))))).))....(((((.....)))))))))).)))))).. ( -19.80)
>DroSim_CAF1 13817 87 - 1
AAUAUAUCCAAAGGU----AUACAUAAUCUGCGGCCAUGUGGCAGAAACUAUGUGCACGCGCUUGUAACACAUAUAAUUUUGAAUAUAUAA
.((((((.(((((((----.((((((.(((((.((...)).)))))...)))))).))....(((((.....)))))))))).)))))).. ( -18.90)
>DroYak_CAF1 14611 87 - 1
CAUAUAUUCAAAGGU----AUAUAUAAUCUGCGGCCAUGUGGCUGAAACUAUGUGCACGCGCUUGUAACACAUAUAAUUUUGAAUAUAUAA
.((((((((((((.(----((((........(((((....)))))..((...(((....)))..)).....))))).)))))))))))).. ( -23.40)
>consensus
AAUAUAUCCAAAGGU____AUACAUAAUCUGCGGCCAUGUGGCAGAAACUAUGUGCACGCGCUUGUAACACAUAUAAUUUUGAAUAUAUAA
.((((((.(((((.........(((((..((((..(((((((......)))))))..)))).)))))..........))))).)))))).. (-16.47 = -16.79 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:40 2006