Locus 7826

Sequence ID 3R_DroMel_CAF1
Location 20,966,928 – 20,967,042
Length 114
Max. P 0.705024
window12616

overview

Window 6

Location 20,966,928 – 20,967,042
Length 114
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 85.30
Mean single sequence MFE -34.12
Consensus MFE -26.52
Energy contribution -27.48
Covariance contribution 0.96
Combinations/Pair 1.10
Mean z-score -1.71
Structure conservation index 0.78
SVM decision value 0.36
SVM RNA-class probability 0.705024
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20966928 114 - 27905053
AACCUUUAUUUGCGGCUUUCCAUAUGCAUAGAGUGCACUUUACCUCCUGGUAGAGAAACAAUACCUGUCCAUGGGUAUGACCACUUAUUUUG-GGCACUUGUGUG--AUGUGUGUUG-
............((((....((((((((((.(((((.(((((((....))))))).....((((((......))))))..(((.......))-))))))))))).--))))).))))- ( -31.50)
>DroSec_CAF1 8595 104 - 1
GACCUU------------UGCAUAUGCAUAGAGUGCACUCUACCUCCUGGUAGAGAAACAAUACCUGUCCAUGGGUAUGGCCACUUAUUUUG-GGCACUUGUGUGAGAUGUGUGAUG-
.....(------------..(((((.((((((((((.(((((((....))))))).....((((((......))))))..(((.......))-))))))).))))..)))))..)..- ( -35.70)
>DroSim_CAF1 8603 104 - 1
GACCUU------------UGCAUAUGCAUAGAGUGCACUCUACCUCCUGGUAGAGAAACAAUACCUGUCCAUGGGUAUGGCCACUUAUUUUG-GGCACUUGUGUGAGAUGUGUGAUG-
.....(------------..(((((.((((((((((.(((((((....))))))).....((((((......))))))..(((.......))-))))))).))))..)))))..)..- ( -35.70)
>DroEre_CAF1 8676 114 - 1
AACAUUUAUUUGCGGCUUUGCAUUCGCAUAGAGCGCAUUCUACCUCCUGGUGGAGAAACAAUACCUGUCCAUGGGUAUGGCCACUUAUUUUG-GGCACUUGUGUG--AUGUGUGCUG-
............((((..(((((.((((((.((.((.(((((((....))))))).....((((((......))))))..(((.......))-))).))))))))--))))).))))- ( -32.80)
>DroYak_CAF1 8761 116 - 1
AGCAUUUAUUUGUGGCUUUGCAUAUGCAUAGAGUGCACCAUACCUCCUGGUAGUGGAACAAUACCUGUCCAUGGGAAUGGCCACUUAUUUUGGGGCACUUGUGUG--AUGUGUGCUGG
.(((......)))(((...(((((((((((.(((((.(((((((....))))((((....((.(((......))).))..))))......))).)))))))))).--))))))))).. ( -34.90)
>consensus
AACCUUUAUUUG_GGCUUUGCAUAUGCAUAGAGUGCACUCUACCUCCUGGUAGAGAAACAAUACCUGUCCAUGGGUAUGGCCACUUAUUUUG_GGCACUUGUGUG__AUGUGUGAUG_
...................(((((((((((.(((((.(((((((....))))))).....((((((......))))))................))))))))))...))))))..... (-26.52 = -27.48 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:38 2006