| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,964,234 – 20,964,354 |
| Length | 120 |
| Max. P | 0.768400 |
| Location | 20,964,234 – 20,964,354 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.50 |
| Mean single sequence MFE | -44.75 |
| Consensus MFE | -35.68 |
| Energy contribution | -37.02 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20964234 120 + 27905053 UCCAGCUGCCACCGAAGUUCGUGGCACUGCCUCCAAACUACGAGGAGCUGGGCUUCGGUGCACUGCCCUACAGUCCAGCCGAUUACCCAGUGCAAAAUGAAUCCCUGCUGGAGAAGCUUA ((((((((((((........))))))...((((........)))).((((((..(((((..((((.....))))...)))))...))))))...............))))))........ ( -44.10) >DroSec_CAF1 5938 120 + 1 UCCAGCUGCCACCAAAGUUCGUGGCACUGCCUCCAAACUACGAGGAGCUGGGCUUCGGAGCACUGCCCUACAGUCCAGCUGAUUACCCAGUGCAAAAUGAAUCCCUGCUGGAGAAGCUGA ..(((((.(((.((..((((((.((((((((((........))))(((((((((..((.((...))))...))))))))).......))))))...))))))...)).)))...))))). ( -48.50) >DroSim_CAF1 5921 120 + 1 UCCAGCUGCCACCAAAGUUCGUGGCACUGCCUCCAAACUACGAGGAGCUGGGCUUCGGAGCACUGCCCUACAGUCCAGCUGAUUACCCAGUGCAAAAUGAAUCCCUGCUGGAGAAGCUGA ..(((((.(((.((..((((((.((((((((((........))))(((((((((..((.((...))))...))))))))).......))))))...))))))...)).)))...))))). ( -48.50) >DroEre_CAF1 6002 120 + 1 UCCAGCUGCCACCGAAGUUCGUGGCACUGCCACCAAACUACGAGGAGCUGGGCUUCGGAGCACUGCCCUACAGUCCAGCCGAUUACCCAGUGCAAAACGAAUCCCUGCUGGAGAAACUGA ((((((.(((..((.((((.(((((...)))))..)))).))..).)).(((.((((..((((((......((((.....))))...))))))....)))).))).))))))........ ( -41.60) >DroYak_CAF1 5964 120 + 1 UUCAGUUGCCACCGAAGUUCGUGGCACUGCCUCCAAACUACGAGGAGCUGGGCUUCGGAGCACUGCCCUACAGUCCAGCCGAUUAUCCGGUGCAAAACGAAUCCCUGCUGGAGAAACUGA .((((((.((((.(..((((((.((((((((((........)))).((((((((..((.((...))))...))))))))........))))))...))))))..).).)))...)))))) ( -45.50) >DroAna_CAF1 6859 120 + 1 UUCAGUUGCCGCCGAAAUUCGUGGCUCUUCCACCAAACUACGAGGAACUGGGCUUCGGAGCACUGCCCUAUUCCCCCACAGACUAUCCCGUGCCGGGGGACUCACUCCUCGAGAAGCUGA .(((((((((((........)))))............((.((((((...((((...........))))...((((((....((......))...)))))).....)))))))).)))))) ( -40.30) >consensus UCCAGCUGCCACCGAAGUUCGUGGCACUGCCUCCAAACUACGAGGAGCUGGGCUUCGGAGCACUGCCCUACAGUCCAGCCGAUUACCCAGUGCAAAAUGAAUCCCUGCUGGAGAAGCUGA ..(((((.(((.((..((((((.((((((((((........)))).((((((((..((.((...))))...))))))))........))))))...))))))...)).)))...))))). (-35.68 = -37.02 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:37 2006