| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,961,934 – 20,962,051 |
| Length | 117 |
| Max. P | 0.629295 |
| Location | 20,961,934 – 20,962,051 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 97.55 |
| Mean single sequence MFE | -21.89 |
| Consensus MFE | -18.79 |
| Energy contribution | -18.82 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20961934 117 + 27905053 GUACAAAAUGUAAGGGCUAACUGCCAACAUAGGUUAUGUAUAUAUUUAAAUUUGUAUGUAUGUAUAAAUUGAGACUUAAAAUAAAUACCGUUUCCUCAUACUUAUACUGCAAAUACU (((((.(((.((..(((.....)))....)).))).)))))........(((((((.(((((........(((((..............)))))........))))))))))))... ( -20.93) >DroSec_CAF1 3661 117 + 1 GUACAAAAUGUAAGGGCUAACUGCCAACAUAGGUUAUGUAUAUAUUUAAAUUUGUAUGUAUGUAUAAAUUGAGACUUAAAAUAAAUACCGUUUCCUCAUAUUUAUACUGCAAAUAUU (((((.(((.((..(((.....)))....)).))).)))))........(((((((.(((((.(((....(((((..............)))))....))).))))))))))))... ( -21.64) >DroSim_CAF1 3663 117 + 1 GUACAAAAUGUAAGGGCUAACUGCCAACAUAGGUUAUGUAUAUAUUUAAAUUUGUAUGUAUGUAUAAAUUGAGACUUAAAAUAAAUACCGUUUCCUCAUAUUUAUACUGCAAAUACU (((((.(((.((..(((.....)))....)).))).)))))........(((((((.(((((.(((....(((((..............)))))....))).))))))))))))... ( -21.64) >DroEre_CAF1 3749 117 + 1 GUACAAAAUGUAAGGGCUAACUGCCAACAUAGGUUAUGUAUAUAUUUAAAUUUGUAUGUAUGUAUAAAUUGAGACUUAAAAUAAAUACCGUUUCCUCAUAUUUAUACAGCAAAUACU (((((.(((.((..(((.....)))....)).))).)))))............((((...(((((((((((((.....................)))).)))))))))....)))). ( -22.70) >DroYak_CAF1 3751 117 + 1 GUACAAAAUGUAAGGGCUAACUGCCAACAUAGGUUAUGUAUAUAUUUAAAUUUGUAUGUAUGUAUAAAUUGAGACUUAAAAUAAAUACCGUUUCCUCAUAUUUAUACAGCAAAUACU (((((.(((.((..(((.....)))....)).))).)))))............((((...(((((((((((((.....................)))).)))))))))....)))). ( -22.70) >DroAna_CAF1 4971 116 + 1 GUACAAAAU-UAAGGGCGGACUGCCAACAUAGGUUAUGUAUAUAUUUAAAUUUGUAUGUAUGUAUAAAUUGAGACUUAAAAUAAAUACCGUUUCCUCAUAUUUAUACAGCAAGUAAU (((((((.(-(((((((.....))).(((((...))))).....))))).)))))))((.(((((((((((((.....................)))).)))))))))))....... ( -21.70) >consensus GUACAAAAUGUAAGGGCUAACUGCCAACAUAGGUUAUGUAUAUAUUUAAAUUUGUAUGUAUGUAUAAAUUGAGACUUAAAAUAAAUACCGUUUCCUCAUAUUUAUACAGCAAAUACU (((((.(((.((..(((.....)))....)).))).)))))........((((((......((((((((((((.....................)))).)))))))).))))))... (-18.79 = -18.82 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:36 2006