| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,960,902 – 20,961,000 |
| Length | 98 |
| Max. P | 0.533562 |
| Location | 20,960,902 – 20,961,000 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 79.85 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -15.85 |
| Energy contribution | -16.35 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.533562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20960902 98 + 27905053 UGUCGUGGGAUUACGCAAAGCCAAGUGCAAGUGAUGAUCCCGAAUGCCUCACUUGUAUCUUCCUGCAGGUACUUCGCUGUGUUUUCGCUGUUAUAAAA- (((.(..(((..(((((..((.((((((((((((.(..........).))))))(((......)))..)))))).)))))))..)).)..).)))...- ( -22.20) >DroPse_CAF1 4488 96 + 1 UAUCUUGGGAUUAUGCGAAGCCAAGUGCAAGUGAUGAUGCGGAAUGUCUCACUUGCAUAUUUUUGCAGGUACACAGU---UUUUCCCCAAUUAUAAAUU ....(((((....(((((((....((((((((((.(((.......)))))))))))))..)))))))(.....)...---.....)))))......... ( -26.80) >DroEre_CAF1 2684 95 + 1 UGUCUUGGGAUUACGCAAAGCCAAGUGCAAGUGAUGAUCCCGAAUGCCUCACUUGCAUCUUCCUGCAGGUAUUUCGC---AUUUUCGGCGUUAUAAAA- .(((..((((((((((...((.....))..))).)))))))((((((...(((((((......))))))).....))---))))..))).........- ( -27.40) >DroYak_CAF1 2703 95 + 1 UGUCCUGGGAUUACGCAAAGCCAAGUGCAAGUGAUGAUCCCGAAUGCCUCACUUGUAUCUUCCUGCAGGUAAUUCGC---AUUUUCGCUGUUAUAAAA- ......((((((((((...((.....))..))).)))))))((((((...(((((((......))))))).....))---))))..............- ( -22.80) >DroAna_CAF1 3900 95 + 1 UAUCUUGGGAUUAUGCAAAGCCUAGCGCAAGUGAUGAUCCCGAAUGCCUGACUUGUAUAUUUUUGCAGGUAUAUAAA---GGAUCAGCCUCUAACUGG- ....((((((((((.((..((.....))...))))))))))))...(((.(((((((......)))))))......)---))..(((.......))).- ( -23.90) >DroPer_CAF1 4484 96 + 1 UAUCUUGGGAUUAUGCGAAGCCAAGUGCAAGUGAUGAUGCGGAAUGUCUCACUUGCAUAUUUUUGCAGGUACACAGC---UUUUCCCCAAUUAUAAAUU ....(((((....(((((((....((((((((((.(((.......)))))))))))))..)))))))(((.....))---)....)))))......... ( -27.50) >consensus UAUCUUGGGAUUACGCAAAGCCAAGUGCAAGUGAUGAUCCCGAAUGCCUCACUUGCAUAUUCCUGCAGGUACAUAGC___AUUUCCGCAGUUAUAAAA_ ....((((((((((((...((.....))..))).))))))))).......(((((((......)))))))............................. (-15.85 = -16.35 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:35 2006