Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,958,332 – 20,958,449 |
Length | 117 |
Max. P | 0.548896 |
Location | 20,958,332 – 20,958,449 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.63 |
Mean single sequence MFE | -36.87 |
Consensus MFE | -19.95 |
Energy contribution | -19.82 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.35 |
Mean z-score | -2.21 |
Structure conservation index | 0.54 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20958332 117 + 27905053 AUUACUGCCGGAGCGCCAUGCAGCAGAAUCCCUCGACUU---CCAUUCCCCAACAUGCGUCGAACAAACUCAACUAUGGGAUGAACGCUGGCCAGGAUUAUGUGACAUGUAGCUCCGGCC ......((((((((..((((..(((.(((((.(((((..---.(((........))).))))).....((((....))))..............))))).)))..))))..)))))))). ( -39.20) >DroPse_CAF1 161 120 + 1 AUUACUGCCGGAGUGCUAUGCAGCAGGAUCCAUCCACUUCGGCAAUUCCACAUAAUUCAUCAAACAAAAUCAAUUAUGGAAUGAAUUCUGGACAGGAAUAUACAGCAUGCAGCCCUUAUC .....((((((((((((....))).(((....))))))))))))(((((.((.(((((((....((.((....)).))..))))))).))....))))).....((.....))....... ( -27.40) >DroEre_CAF1 17 117 + 1 AUUACUGCCGGAGCGCCAUGCAGCAGAAUCCCUCGACUU---CCAUUCCCCAACAUGCGGCGAACAAACUCAACUAUGGGAUGAACGCUGGCCAGGAUUAUGUGACAUGUAGCUCCGGCC ......((((((((..((((..(((.(((((........---.(((........)))(((((..((..((((....)))).))..)))))....))))).)))..))))..)))))))). ( -39.40) >DroYak_CAF1 17 117 + 1 AUUACUGCCGGAGCGCCAUGCAGCAGAAUCCCUCGACUU---CCAUUCCCCAGCAUGCGGCGAACAAACUCAACUAUGGGAUGAACGCUGGCCAGGAUUAUGUGACAUGUAGCUCCGGCC ......((((((((..((((..(((.(((((...(....---.).....(((((....(.....)...((((....))))......)))))...))))).)))..))))..)))))))). ( -40.10) >DroAna_CAF1 17 120 + 1 AUUACUGCCGGGGUGCUAUGCAGCAGACAUCCGCUGCUUCGUCAAUUCCACAGCAUUCGUCCAACAAAGUCAACUAUGGGAUGAAUGCCGGGCAGGAAUAUGUGACAUGCAGCUCCGGUC ......((((((((((...(((((.(....).)))))...(((((((((.(.((((((((((..((.((....)).)))))))))))).)....)))))...))))..))).))))))). ( -47.70) >DroPer_CAF1 21 120 + 1 AUUACUGCCGGAGUGCUAUGCAGCAGGAUCCAUCCACUUCGGCAAUUCCACAUAAUUCAUCAAACAAAAUCAAUUAUGGAAUGAAUUCUGGACAGGAAUAUACAGCAUGCAGCCCUUAUC .....((((((((((((....))).(((....))))))))))))(((((.((.(((((((....((.((....)).))..))))))).))....))))).....((.....))....... ( -27.40) >consensus AUUACUGCCGGAGCGCCAUGCAGCAGAAUCCCUCGACUU___CAAUUCCACAACAUGCGUCGAACAAACUCAACUAUGGGAUGAACGCUGGCCAGGAAUAUGUGACAUGCAGCUCCGGCC ......((((((((..((((..(((...(((.............(((((............................)))))............)))...)))..))))..)))))))). (-19.95 = -19.82 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:34 2006