| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,950,374 – 20,950,491 |
| Length | 117 |
| Max. P | 0.603199 |
| Location | 20,950,374 – 20,950,491 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 88.89 |
| Mean single sequence MFE | -45.65 |
| Consensus MFE | -37.19 |
| Energy contribution | -37.00 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20950374 117 + 27905053 ACAUUGAGGACUUAAAGACGACCGGGGAGACCUCACCGCAGGCGGAAAAGGAGGACUCGGCCAACGAACAGUCGGCUGAUCCCGCGGUCGCCGCCGAAGAGGAUGAGUCCAAGCAGA .......(((((((..(.((((((((((..((((.(((....))).....))))..((((((.((.....)).)))))))))).)))))).).((.....)).)))))))....... ( -49.60) >DroSec_CAF1 13910 117 + 1 ACAUUGAGGACUUAAAGACGACCGGGGAGACCUCACCGCAGGCGGAAUAGGAGGACUCGGCCAACGAACAGUCGGCUGAUCCCGCGAUCGCCGCCGAGGAGGAUGAGUCCAAGCAGA .......(((((((.........(((....)))..((...(((((....(..(((.((((((.((.....)).)))))))))..).....)))))..))....)))))))....... ( -44.20) >DroSim_CAF1 13775 117 + 1 ACAUUGAGGACUUAAAGACGACCGGGGAGACCUCACCGCAGGCGGAAAAGGAGGACUCGGCCAACGAACAGUCGGCUGAUCCCGCGGUCGCCGCCGAGGAGGAUGAGUCCAAGCAGA .......(((((((....((((((((((..((((.(((....))).....))))..((((((.((.....)).)))))))))).))))))((.(....).)).)))))))....... ( -49.80) >DroEre_CAF1 13803 117 + 1 ACAUUGAGGACUUAAAGACGACCGGGGAGACGUCACCGCAGGCGGAAAAAGAGGACUCGGCCAACGAACAGUCGGCUGAUCCCGCGGUCGCGGCCGAGGAGGAUGAGUCCAAGCAGA .......(((((((..(.((((((((((..((((......))))............((((((.((.....)).)))))))))).)))))))..((.....)).)))))))....... ( -44.90) >DroYak_CAF1 13853 117 + 1 ACAUUGAGGACUUAAAGACGGUCGGGGAGACUUCACCGCAGGCGGAAAAAGAGGACUCGGCCAACGAACAGUCGGCCGAUCCCGCGGUCGCCCCCGAGGAGGAUGAGUCCAAGCAGA .......(((((((....(..((((((.((((.(.(((....))).....(.(((.((((((.((.....)).))))))))))).))))..))))))...)..)))))))....... ( -47.80) >DroAna_CAF1 13884 114 + 1 ACAUCGAGGAUCUGAAGA---CCGGCGAGUCGGCCCCGCAGGCGGACAAAGACGACUCGGUCAAUGAGGUAUCGGCGGAGGCGGCCAUCGCUGCUGAGGAGGACGAGUCCAAGCAGA ..........((((....---(((.((((((.(((.....))).)))........((((.....))))...))).))).((((((....)))))).....(((....)))...)))) ( -37.60) >consensus ACAUUGAGGACUUAAAGACGACCGGGGAGACCUCACCGCAGGCGGAAAAAGAGGACUCGGCCAACGAACAGUCGGCUGAUCCCGCGGUCGCCGCCGAGGAGGAUGAGUCCAAGCAGA .......(((((((....((((((.((...((((.(((....))).....))))..((((((.((.....)).))))))..)).))))))...((.....)).)))))))....... (-37.19 = -37.00 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:33 2006