Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,949,894 – 20,949,991 |
Length | 97 |
Max. P | 0.640120 |
Location | 20,949,894 – 20,949,991 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 82.32 |
Mean single sequence MFE | -26.70 |
Consensus MFE | -16.56 |
Energy contribution | -17.92 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.25 |
Mean z-score | -1.90 |
Structure conservation index | 0.62 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640120 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20949894 97 + 27905053 CGUUUUUUCUGCGUGGAAAAUGCUGCCCUGUAAUGGCGGCAUGCUGCAAAAUAUAGAGAAAACGCAACCCUUGGCAACAAGAUUGAUUACAUAUCGC------ .((((((((((.(..(...((((((((.......)))))))).)..)......))))))))))((....((((....))))...(((.....)))))------ ( -31.10) >DroSec_CAF1 13437 95 + 1 CGUUUUUCCUGCGUGGAAAAUGCUGCCAUGUAAUGGCGGCAUGCUGCAAAAUAUAGAGAAAACGCAACCCUUGGCAACAAGAUU-ACAA-AUAUCGC------ ((((((..(((.(..(...((((((((((...)))))))))).)..)......)))..)))))).....((((....))))...-....-.......------ ( -29.20) >DroSim_CAF1 13302 96 + 1 CGUUUUUCCUGCGUGGAAAAUGUUGCAUUGUAAUGGCGGCAUGCUGCGAAAUAUAGAGGAAACGCAACCCUUGGCAACAAGAUU-ACAACAUAUCGC------ ((((((..(((((..(...(((((((.........))))))).)..)).....)))..)))))).....((((....))))...-............------ ( -25.10) >DroEre_CAF1 13332 99 + 1 CGAUUUUCCUGAGUGGAAUAUGCUAGUCUGCAAUGGCGACAUGCUGUAAAAUAUAGUGAAAAUGGAACCCAUGGCAACAAGAUU-AC---AUAUCGCUUAAUU .........((((((..(((((.((((((((.((((...(((((((((...))))))....)))....)))).))....)))))-))---))))))))))... ( -21.00) >DroYak_CAF1 13362 99 + 1 CUACUUUCCUGUGUGGAAAAUGCUUGCCUACAAUGGCGGCAUGCUGCAAAAUAUAGAGAAAAUGGAAGCCUUGGCAACAAGAUU-AC---AUAUCGCUUGCUC (((.((((((((((.(...(((((.(((......))))))))....)...)))))).)))).)))((((.(((....)))(((.-..---..))))))).... ( -27.10) >consensus CGUUUUUCCUGCGUGGAAAAUGCUGCCCUGUAAUGGCGGCAUGCUGCAAAAUAUAGAGAAAACGCAACCCUUGGCAACAAGAUU_AC_A_AUAUCGC______ ((((((..(((..((.(..((((((((.......))))))))..).)).....)))..)))))).....((((....))))...................... (-16.56 = -17.92 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:32 2006