| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,948,810 – 20,948,905 |
| Length | 95 |
| Max. P | 0.830334 |
| Location | 20,948,810 – 20,948,905 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 83.28 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -13.58 |
| Energy contribution | -15.80 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20948810 95 + 27905053 AAUCGAUAAUUACCAUUA----UUCUGUACAGUUGCUCGUUACUCACCAUUUGGUAUCUAUCGGUUAAACAUUUAUAAUAAUAUUUGGUUAUAUUAAUA ((((((((..(((((...----....((((........).)))........)))))..))))))))............((((((......))))))... ( -15.36) >DroSec_CAF1 12271 95 + 1 AAUCGAUAGUUACUAAUAGUCAUUAUUGACAGUUUCUCGUUA----CCAUUUGGUAUCUAUCGAUUCAAAAGUUAUAUUAAUAUUUGGCUAUAUUAAUA (((((((((.((((((..((((....)))).((........)----)...)))))).))))))))).........(((((((((......))))))))) ( -22.20) >DroSim_CAF1 12125 95 + 1 AAUCGAUAGUCCCUAAUAGUCAUUAUUGACAGUUGCUCGUUA----CCAUUUGGUAUCUAUCGGUUCAAAAGUUAUUUUAAUAUUUGGGUAUAUUAAUA (((((((((....((((.((((....)))).)))).....((----((....)))).)))))))))...........(((((((......))))))).. ( -18.90) >consensus AAUCGAUAGUUACUAAUAGUCAUUAUUGACAGUUGCUCGUUA____CCAUUUGGUAUCUAUCGGUUCAAAAGUUAUAUUAAUAUUUGGCUAUAUUAAUA (((((((((.((((((..........((((........))))........)))))).))))))))).........(((((((((......))))))))) (-13.58 = -15.80 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:31 2006