Locus 7817

Sequence ID 3R_DroMel_CAF1
Location 20,945,839 – 20,945,956
Length 117
Max. P 0.744844
window12606

overview

Window 6

Location 20,945,839 – 20,945,956
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 84.87
Mean single sequence MFE -29.99
Consensus MFE -19.20
Energy contribution -20.52
Covariance contribution 1.32
Combinations/Pair 1.19
Mean z-score -2.24
Structure conservation index 0.64
SVM decision value 0.46
SVM RNA-class probability 0.744844
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20945839 117 - 27905053
CCACAGUCUGCAAUGAAUACAGCGAAAACUUCACAGAAUUCUGGAGGUCCUGCUCCAAAAACUACUGUGAGCAAUACUACUUCUCAGCAAGCAGUAAAUGUUCAGAUUGAAAAGCAA
...(((((((.((((..(((.((....(((((.(((....))))))))..(((((((........)).))))).................)).)))..)))))))))))........ ( -27.50)
>DroSec_CAF1 9119 117 - 1
CCACAGUCUGCAACGCCUACAGCGAACACUUCACAGAAGCCUGGAGGUCCUGCUUCAAAAACUACUGUGAGCACUACUUCUUCUCAGCAAGCAGUGAAUGUUCAGAUUGAAAAACAA
...((((((.....((.....))(((((.(((((.(((((..((....)).)))))........(((.(((.........))).)))......))))))))))))))))........ ( -30.10)
>DroSim_CAF1 9100 117 - 1
CCACAGUCUGCAACGCCUACAGCGAUCACUUCACAGAAGCCUGGAGGUCCUGCUCCAAAAACUACUGUGAGCACUACUACUUCUCAGCAAGCAGUGAAUGUUCAGAUUGAAAAACAA
...(((((((.(((((.....))..(((((((((((.((..(((((......)))))....)).))))))((..............))....)))))..))))))))))........ ( -31.14)
>DroEre_CAF1 8973 117 - 1
CCACAGUCGGCAACGGCUACAGCAAACACUUCCUCGAUUUCGGGAGGUCCUGCUCCAAAAACUAGUGUAAGCAAUACCACUUUGCAGCAGGCAGCGGAUGUUCAGACCCAAAAACAA
((..(((((....)))))...((....((((((.((....))))))))((((((.(((.....((((..(....)..))))))).))))))..)))).................... ( -33.90)
>DroYak_CAF1 9055 117 - 1
CCACAGCCUGCAACGGCUACAGAAAACAAAUCCCAGAAUUCUGGAGGUCCUGCUACAAAAACUACUGUAGGCAAUACUACUUCGCAGCAGCCAGCGAAUGUUCAGACCCAAAAGCAA
....((((......))))..............((((....)))).((..(((..(((.........((((......))))(((((........)))))))).)))..))........ ( -27.30)
>consensus
CCACAGUCUGCAACGCCUACAGCGAACACUUCACAGAAUUCUGGAGGUCCUGCUCCAAAAACUACUGUGAGCAAUACUACUUCUCAGCAAGCAGUGAAUGUUCAGAUUGAAAAACAA
...(((((((.((((.....((((...(((((.(((....))))))))..))))........((((((..((..............))..))))))..)))))))))))........ (-19.20 = -20.52 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:28 2006