Locus 7815

Sequence ID 3R_DroMel_CAF1
Location 20,941,556 – 20,941,667
Length 111
Max. P 0.728864
window12603

overview

Window 3

Location 20,941,556 – 20,941,667
Length 111
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 90.91
Mean single sequence MFE -26.24
Consensus MFE -20.72
Energy contribution -20.76
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.62
Structure conservation index 0.79
SVM decision value 0.42
SVM RNA-class probability 0.728864
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20941556 111 - 27905053
AUCCGAAAAUCCGGAAAACAUUGUCUGAGAAGUCCUCUGCACAAGUGUUAACGGACACGAAGGAUAAUGAGG---AGAAGCCCGUUCAAAGCCCACAAAAACUGGCGGAAGAAG
.((((......))))...((((((((.....((((...(((....)))....)))).....)))))))).((---......)).(((...(((..........))).))).... ( -26.60)
>DroSec_CAF1 4715 114 - 1
AUCCGAAAAUCCGGAAAACAUUGUCUGAGAAGUCCUCUGCACAAGUGUUAACGGACACGAAGGAUAAUGAGGAGGAGAAGCCCGUUCAAAGCCCACAAAAACUGGCGGAAAAAG
.((((.....((((....((((((((.....((((...(((....)))....)))).....)))))))).(((((......)).)))..............))))))))..... ( -27.10)
>DroSim_CAF1 4731 111 - 1
AUCCGAAAAUCCGGAAAACAUUGUCUGAGAAGUCCUCUGCACAAGUGUUAACGGACACGAAGGAUAAUGAGG---AGAAGACCGAUCAAAGCCCACAAAAACUGGCGGAAAUAG
.((((.....((((....((((((((.....((((...(((....)))....)))).....)))))))).((---......))..................))))))))..... ( -25.60)
>DroEre_CAF1 4566 111 - 1
AUCCGAAAAUCCGGAAAACAUUGUCUGAGAAGUCCUCUGCACAAGUGUUAACGGAAUCGAAGGAUAAUGAGG---AAGAGGCCGUUCAAUGCCAAGAAAAACAAGAGCAAAAAG
.((((......))))...((((((((..((..(((...(((....)))....))).))...))))))))...---....(((........)))..................... ( -23.20)
>DroYak_CAF1 4695 111 - 1
AUCCGAAAAUCCGGAAAACAUUGUCCGAAAAGUCCUCUGCACAAGUGUUAACGGACACAAAGGAUAAUGAGG---AAGAGGCCGUUCAAUGCCAAGAAAAACUGGAGCAAAAAG
.........(((((....((((((((.....((((...(((....)))....)))).....))))))))...---....(((........)))........)))))........ ( -28.70)
>consensus
AUCCGAAAAUCCGGAAAACAUUGUCUGAGAAGUCCUCUGCACAAGUGUUAACGGACACGAAGGAUAAUGAGG___AGAAGCCCGUUCAAAGCCCACAAAAACUGGCGGAAAAAG
.((((......))))...((((((((.....((((...(((....)))....)))).....))))))))............................................. (-20.72 = -20.76 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:25 2006