Locus 7814

Sequence ID 3R_DroMel_CAF1
Location 20,939,958 – 20,940,078
Length 120
Max. P 0.551084
window12602

overview

Window 2

Location 20,939,958 – 20,940,078
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.28
Mean single sequence MFE -40.33
Consensus MFE -24.65
Energy contribution -26.35
Covariance contribution 1.70
Combinations/Pair 1.27
Mean z-score -2.34
Structure conservation index 0.61
SVM decision value 0.03
SVM RNA-class probability 0.551084
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20939958 120 - 27905053
UCAUGUCUGAUGGCAGACCUAUUGACGUGUGUGGGCAUUCCAGCCUAUAGUCCCGAAAUGAAAUCUCAUUAUGACCAGAAAUGGUCGCGUUUCCGCAGCUCAAGCUGCCAAAGGAUAGCA
.((((((.(((((.....)))))))))))(((((((......))))))).......(((((....)))))..(((((....)))))((...((((((((....)))))....)))..)). ( -41.70)
>DroSim_CAF1 3133 120 - 1
UCAUGUCUGAUGGCAGACCUAUUGACGUGUGUGGGCAUUCCAGCCUAUAGUCCCGAAAUGAGAUCUCAUUUUGACCAGAAAUGGUCGCGUUUCCGCAGCACAAGCUGCCUAAGGCAAGCA
.((((((.(((((.....)))))))))))(((((((......))))))).....(((((((....)))))))(((((....)))))((.((...(((((....)))))..)).))..... ( -43.10)
>DroEre_CAF1 2971 120 - 1
UCAUGCCUAAUGGCAGACCUAUUGACGUGUGUGGGCAUUCCAGCCUAUAGUCCAGAAAUGAGAUCUCAUUAUGACCAGAAAUGGUCGCGUUUCCGCAGCUCAAGCUGCCAAAGGCAAGCC
...(((((..((((((.......(((...(((((((......))))))))))......((((..........(((((....)))))(((....)))..))))..)))))).))))).... ( -43.60)
>DroWil_CAF1 6148 117 - 1
GCCUGUCUAAUUGCAGAUCUCCUCACUUGCGUUGGCAUUCCGGCGUAUAGUCCAGAAAUGAGAUCGCAUUUAGAUAGCAAAUGGACACGAUUUCGUAGUACAAGUUGUCAGAGGAGA---
..((((......)))).(((((((...((((((((....))))))))..(((((....((..(((.......)))..))..)))))(((((((.(.....))))))))..)))))))--- ( -36.00)
>DroYak_CAF1 3097 120 - 1
UCAUGCCUGAUGGCAGACCUAUUGACGUGUGUGGGCAUUCCAGCCUAUAGUCCAGAAAUGAGAUCUCAUUAUGACCAGAAAUGGUCACGUUUCCGCAGCUCAAGCUGCCAAAGGCAAGCC
...(((((..((((((.....((((..(((((((((......))))).......((((((.(....)....((((((....))))))))))))))))..)))).)))))).))))).... ( -44.30)
>DroAna_CAF1 2827 120 - 1
UCCUGCCUGAUGGCUGAUCUACUGACAUGCGUCGGCAUUCCGGCUUAUAGUCCGGAAAUGAGAUCUCAUUACGAUCAGAAGUGGUCCCGAUUUCGCAGCUCCAGUUGCCAACGACAAGCC
...........((((..((..(((((....)))))..(((((((.....).))))))..((((((..(((((........)))))...))))))(((((....)))))....))..)))) ( -33.30)
>consensus
UCAUGCCUGAUGGCAGACCUAUUGACGUGUGUGGGCAUUCCAGCCUAUAGUCCAGAAAUGAGAUCUCAUUAUGACCAGAAAUGGUCGCGUUUCCGCAGCUCAAGCUGCCAAAGGCAAGCC
...(((((...(((((.....((((..(((((((((......))))).........(((((....)))))..(((((....))))).......))))..)))).)))))..))))).... (-24.65 = -26.35 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:24 2006