| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,930,244 – 20,930,341 |
| Length | 97 |
| Max. P | 0.838032 |
| Location | 20,930,244 – 20,930,341 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.22 |
| Mean single sequence MFE | -30.24 |
| Consensus MFE | -21.71 |
| Energy contribution | -21.30 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20930244 97 - 27905053 -CCCUUUGCCUGUUGGUUCAAAUGCUUCCGACCAAAGGCGAAGGACCUCAUAGAUGCUAGUUCCGAUUGGGAUUGCAUUUCCCAGGA---CGAUGAA-ACAC------------------ -.(((((((((.((((((...........))))))))))))))).(((...((((((.((((((....))))))))))))...))).---.......-....------------------ ( -33.60) >DroSec_CAF1 13747 97 - 1 -CCCUUUGCCUGUUGGUGCAAGUGCUUCCGACCAAAGGCGAAGGAUCUCAUAGAUGCCAGUUCCGAUUGGGAUUGCGUUUCCCAGAA---CGAUGAA-ACCC------------------ -.((((((((((((((.((....))..)))))...))))))))).(((...((((((.((((((....))))))))))))...))).---.......-....------------------ ( -33.80) >DroSim_CAF1 22107 97 - 1 -CCCUUUGCCUGUUGGUGCAAGUGCUUCCGACCAAAGGCGAAGGAUCUCAUAGAUGCUAGUUCCGAUUGGGAUUGCAUUUCCCAGAA---CGAUGAA-ACUC------------------ -.((((((((((((((.((....))..)))))...))))))))).(((...((((((.((((((....))))))))))))...))).---.......-....------------------ ( -34.20) >DroEre_CAF1 22096 97 - 1 -CCCUUUGCCUGUUGGUGCAAGUGCUUCCGACCAAAGGCGAGGGACCUCAUAGAAGCCAGUUCCGAUUGGGAUUGCAUUUCUCAAAA---CGAUGAA-ACAC------------------ -.((((((((((((((.((....))..)))))...)))))))))...(((((((((.(((((((....)))))))..))))).....---..)))).-....------------------ ( -30.91) >DroYak_CAF1 20439 97 - 1 -CCCUUUGCCUGUUGGUGUAAGUGCUUCCGACCAAAGGCGACGGACCUCAUAGAAGCUAGCUCCGAUUGGGACUGCAUUUCUCAAAA---CAGCGAA-ACAC------------------ -.((.(((((((((((.((....))..)))))...)))))).))...............(((....((((((.......))))))..---.)))...-....------------------ ( -22.40) >DroPer_CAF1 56063 120 - 1 ACCAUUUGUAUUUUGGUGCAAGUGCUUUAGACCAAAGGUUGAAGAUUUGAUGGCAGCUAGUACCGAAUGGUUUUGUAGUCCUCAAGAUACCGAUGAGAACUCGAAAGGAAGUCAAAAAGU ..((((.(((((((((..(((((.((((((.((...)))))))))))))..(((.((....(((....)))...)).))).))))))))).)))).((..((....))...))....... ( -26.50) >consensus _CCCUUUGCCUGUUGGUGCAAGUGCUUCCGACCAAAGGCGAAGGACCUCAUAGAAGCUAGUUCCGAUUGGGAUUGCAUUUCCCAAAA___CGAUGAA_ACAC__________________ ..((((((((((((((.((....))..)))))...))))))))).......(((.((.((((((....)))))))).)))........................................ (-21.71 = -21.30 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:18 2006