| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,691,530 – 2,691,626 |
| Length | 96 |
| Max. P | 0.528652 |
| Location | 2,691,530 – 2,691,626 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 76.26 |
| Mean single sequence MFE | -25.65 |
| Consensus MFE | -16.83 |
| Energy contribution | -17.08 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2691530 96 + 27905053 CGGAACCGAAAGCCGUACCGCCACGAAACCGAA-------GCGCACUUCUCUCGACCAUUUGUAGGUGACACGCAAAUGACA-CAGCCGAGAACGAAGCUGCGA-- (((...(....).(((......)))...)))..-------.(((((((((((((.((((((((.(....)..)))))))...-..).)))))..)))).)))).-- ( -26.00) >DroPse_CAF1 32110 85 + 1 CGGAACAGAG--UCGCACA--CAC-------A---------AGCACUUCUCUCGACCAUUUGCCGGUGACACGCAAAUGCCG-AAGCCGAGACCGAAGCUGCAACC ..........--.......--...-------.---------.((((((((((((.((((((((.(....)..)))))))...-..).)))))..)))).))).... ( -20.90) >DroEre_CAF1 2171 96 + 1 CCGAACCGAAAGCCGUACCGCCACGAAACCGAA-------GCGGACUUCUCUCGACCAUUUGUUGGUGACACGCAAAUGACA-CAGCCGAGACCGAAGCUGCGA-- ......(((.((..((.((((..((....))..-------))))))..)).)))..(((((((((....)).))))))).(.-((((((....))..)))).).-- ( -27.10) >DroYak_CAF1 1485 96 + 1 CGAAACCAAAAGCCGUACCGCCACGAAACCGAA-------GCGCACUUCUCUCGACCAUUUGUUGGUGACACGCAAAUGACA-CAGCCGAGAACGAAGCUGCGA-- .............(((......)))........-------.(((((((((((((.((((((((((....)).)))))))...-..).)))))..)))).)))).-- ( -23.80) >DroAna_CAF1 1621 98 + 1 --GGAUCGAAACUCG----GCCAC--AACCAAAGAAGCCAACGCACUUCUCUCGGCCAUUUGCCGGUGACACGCAAAUGCCAAAAGCCGAGAAGGAAGCUGCGAGG --.........((((----((..(--.......)..)))...(((((((((((((((((((((.(....)..)))))))......)))))))..)))).)))))). ( -34.40) >DroPer_CAF1 32054 85 + 1 CGGAACCGAG--ACGCACA--CAC-------A---------AGCACUUCUCUCGACCAUUUGCCGGUGACACGCAAAUGCCG-AAGCCGAGACCGAAGCUGCAACC ((....))..--.......--...-------.---------.((((((((((((.((((((((.(....)..)))))))...-..).)))))..)))).))).... ( -21.70) >consensus CGGAACCGAAAGCCGUACCGCCAC__AACCGAA_______GCGCACUUCUCUCGACCAUUUGCCGGUGACACGCAAAUGACA_AAGCCGAGAACGAAGCUGCGA__ .........................................(((((((((((((.((((((((.(......))))))))......).)))))..)))).))))... (-16.83 = -17.08 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:59 2006