| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,924,370 – 20,924,461 |
| Length | 91 |
| Max. P | 0.616880 |
| Location | 20,924,370 – 20,924,461 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 77.16 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -17.68 |
| Energy contribution | -17.07 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.19 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20924370 91 + 27905053 AUGUCCGGCCUAAGGGUCGUCUUUAGGAACACAAAGAGAACCUGGUUCUUCGACGCCUUUCCCAGGUGAGAUAAUUC----------GUUGAAUUGCGU-UC .((((..(((((((((.((((...((((((....((.....)).)))))).)))))))))...))))..))))...(----------((......))).-.. ( -23.30) >DroPse_CAF1 18506 88 + 1 AUGUCUGGCCUGAGAGUCGUCUUUAGAAACACAAAGAGAACAUGGUUUUUUGACGCUUUCCCUAGGUAAGAAC--------------UUUAAAUUGACUUUU ...(((.(((((((((.((((...((((((.((.........)))))))).)))))))))...)))).)))..--------------............... ( -19.90) >DroEre_CAF1 16234 91 + 1 AUGUCCGGCCUAAGGGUCGUCUUUAGGAACACAAAGAGAACCUGGUUCUUUGACGCCUUUCCCAGGUGAGUAAAAUU----------UUUGAUUUGCGA-UU ..(((..(((((((((.((((...((((((....((.....)).)))))).)))))))))...))))..(((((...----------.....)))))))-). ( -22.20) >DroYak_CAF1 14515 101 + 1 AUGUCCGGCCUAAGGGUCGUCUUUAGGAACACAAAGAGAACCUGGUUCUUUGACGCCUUCCCCAGGUAAGAUAAUUUGCGAUAAUUCGCUGAUUUGCGA-UC .((((..((((.((((.((((...((((((....((.....)).)))))).))))))))....))))..))))............((((......))))-.. ( -27.80) >DroAna_CAF1 5645 82 + 1 AUGUCUGGCCUGAGAGUCGUGUUUAGGAACACAAAGAGAACUUGGUUCUUUGACGCAUUUCCCAGGUAAGCGUA-------------------CUGCGU-CC (((.((.(((((.(((..(((((.((((((...(((....))).)))))).)))))..))).))))).))))).-------------------......-.. ( -25.60) >DroPer_CAF1 43488 88 + 1 AUGUCUGGCCUGAGAGUCGUCUUUAGAAACACAAAGAGAACAUGGUUUUUUGACGCUUUCCCUAGGUAAGAAC--------------UUUAAAUUGACUUUU ...(((.(((((((((.((((...((((((.((.........)))))))).)))))))))...)))).)))..--------------............... ( -19.90) >consensus AUGUCCGGCCUAAGAGUCGUCUUUAGGAACACAAAGAGAACCUGGUUCUUUGACGCCUUCCCCAGGUAAGAAAA_____________UUUGAAUUGCGU_UC .......(((((((((.((((...((((((.((.........)))))))).)))))))))...))))................................... (-17.68 = -17.07 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:14 2006