Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,923,313 – 20,923,433 |
Length | 120 |
Max. P | 0.541126 |
Location | 20,923,313 – 20,923,433 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.22 |
Mean single sequence MFE | -29.82 |
Consensus MFE | -18.77 |
Energy contribution | -19.39 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.24 |
Mean z-score | -1.58 |
Structure conservation index | 0.63 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.541126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20923313 120 + 27905053 UGGUGUUUUGUACUCGCUGCCCAGGCGGUCACACUAAAAAUACCAAAAGCGCCGUUGUUUUUUAGGGCGUUUUAGCCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU (((((((((......(((((....))))).......)))))))))...(.((...(((......(((((...(((((((...........)))))))..)))))....)))..))).... ( -32.52) >DroSec_CAF1 6840 120 + 1 UGGCCUUUUGUACUCGCUGCCCAGGCGGUCACACUAAAAAUACCGAAAGCGCCGUUGUUUUUUAGGGCGUUUUAUUCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU ((((....((((...(((((....))))).....((((...(((.((((((((.(........).)))))))).........((......)))))..))))......))))..))))... ( -27.20) >DroSim_CAF1 15207 120 + 1 UGGCGUUUUGUAGCCGCUGCCCAGGCGGUCACACUAAAAAUACCGAAAGCGCCGUUGUUUUUUAGGGCGUUUUAUUCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU (((((...((((((((((.....)))))......((((...(((.((((((((.(........).)))))))).........((......)))))..)))).....))))).)))))... ( -32.00) >DroEre_CAF1 15178 120 + 1 UGGCAUUUUGCACUCGCUGCGCAGGCGGUCACACUAUAAAUACCGAAAGCGCCGUUGUUUUUUAGGGCGUUUUAGCCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU (((((....(((.....)))(((((((..(((((((.(((((.((.......)).)))))..)))(((......)))............))))..)))))))..........)))))... ( -33.00) >DroYak_CAF1 13447 120 + 1 UGGCUAUUUGCAGUCGCUGAGCAGGCGGUCACACUGUAAAUACCAAAAGCGCCGUUGUUUUUUAGGGCGUUUUAGCCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU ((((((((((((((((((.....)))).....))))))))))...((((((((.(........).))))))))((((((...........)))))).................))))... ( -33.90) >DroPer_CAF1 42506 92 + 1 ----------------------AUGCGGUCACACUUUUAAUACUAAGAGAG----UAUUUUCUAAGAUGUUUUGUUCACAUUA--UAGUUGUGGUUGCGUUCUUGUCUCUAUUGGCAUUU ----------------------(((((..((((((((((....))))))..----......(((.(((((.......))))).--))).))))..)))))...((((......))))... ( -20.30) >consensus UGGCGUUUUGUACUCGCUGCCCAGGCGGUCACACUAAAAAUACCAAAAGCGCCGUUGUUUUUUAGGGCGUUUUAGCCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU ((((.....((....))....((((((..((((............((((((((.(........).))))))))................))))..))))))............))))... (-18.77 = -19.39 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:13 2006