Locus 7803

Sequence ID 3R_DroMel_CAF1
Location 20,918,131 – 20,918,247
Length 116
Max. P 0.601927
window12583

overview

Window 3

Location 20,918,131 – 20,918,247
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -27.38
Consensus MFE -23.90
Energy contribution -23.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.34
Structure conservation index 0.87
SVM decision value 0.14
SVM RNA-class probability 0.601927
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20918131 116 - 27905053
UCGACUCUUUUUUAGCACACCGAAAUUCGCAGCGCUGAGAUGAAAGCU---GCUCGACCCAUAAACUAAAUCAAUUUAGUUAUUUCCGUCCUACG-GCUGCUUGCCUCGUUAAUGAAGAU
.....(((((.(((((..((.((((((((.((((((........))).---))))))......(((((((....)))))))))))).)).....(-((.....)))..))))).))))). ( -27.20)
>DroSec_CAF1 1467 116 - 1
UCGACUCUUUUUUAGCACACCGAAAUUCGCAGCGCUGAGAUGAAAGCA---GCUCGACCGAUAAACUAAAUCAAUUUAGUUAUUUCCGUCCUACG-GCUGCUCGCCUCGUUAAUGAAGAU
.....(((((.(((((....((.....)).......(((.(((..(((---(((.(((.((..(((((((....)))))))...)).)))....)-)))))))).)))))))).))))). ( -28.80)
>DroSim_CAF1 9879 116 - 1
UCGACUCUUUUUUAGCACACCGAAAUUCGCAGCGCUGAGAUGAAAGCA---GCUCGACCCAUAAACUAAAUCAAUUUAGUUAUUUCCGUCCUACG-GCUGCUCGCCUCGUUAAUGAAGAU
.....(((((.(((((..((.((((((((.((((((........))).---))))))......(((((((....)))))))))))).)).....(-((.....)))..))))).))))). ( -26.60)
>DroEre_CAF1 9760 120 - 1
UCGACUCUUUUUUAGCACACCGAAAUUCGCAGCGCUGAGAUGAAAGCUGCUGCUCGACCCAUAAACUAAAUCAAUUUAGUUAUUUCCGUCCUACGGGCUGCUCACCUCGUUAAUGAAGAU
.....(((((.(((((.....(((((..((((((((........))).)))))..........(((((((....)))))))))))).((((...))))..........))))).))))). ( -28.50)
>DroYak_CAF1 7903 116 - 1
UCGACUCUUUUUUAGCACACCGAAAUUCGCAGCGCUGAGAUGAAAGCU---GCUCGACCCAUAAACUAAAUCAAUUUAGUUAUUUCCGUCCUACG-GCUGCUCACCUCGUUAAUGAAGAU
.....(((((.(((((....((.....)).......(((.(((.((((---(...(((.....(((((((....)))))))......)))...))-)))..))).)))))))).))))). ( -25.80)
>consensus
UCGACUCUUUUUUAGCACACCGAAAUUCGCAGCGCUGAGAUGAAAGCU___GCUCGACCCAUAAACUAAAUCAAUUUAGUUAUUUCCGUCCUACG_GCUGCUCGCCUCGUUAAUGAAGAU
.....(((((.(((((.....(.....)((((((((........)))........(((.....(((((((....)))))))......)))......))))).......))))).))))). (-23.90 = -23.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:05 2006