Locus 7801

Sequence ID 3R_DroMel_CAF1
Location 20,911,986 – 20,912,106
Length 120
Max. P 0.957750
window12581

overview

Window 1

Location 20,911,986 – 20,912,106
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 70.10
Mean single sequence MFE -21.35
Consensus MFE -12.54
Energy contribution -12.35
Covariance contribution -0.19
Combinations/Pair 1.21
Mean z-score -1.85
Structure conservation index 0.59
SVM decision value 1.48
SVM RNA-class probability 0.957750
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20911986 120 - 27905053
GCUAAGCCUUAAACUUGUGUCACGCAAGUAAAACAAGUUUCUUGUAAAUGUGUUAAUUUGUACAAAAUGCAAAAAGGCACCAUAAGAAACCGCAUUUAAAUUGAGCAAAUUGGCAGCGAC
(((((..((((((((((((...))))))).......(((((((((....(((((..((((((.....))))))..))))).)))))))))..........)))))....)))))...... ( -29.00)
>DroSim_CAF1 4029 102 - 1
GCUAAGCCUUAAACUUGUGUCACGCAAGUAAAACAAGUUUCUUGUAAAUGUGUUAAUUUUUAAAAAAUGCAAAA--------UCAGUAACCACAUUUA----------AUUGGCAGCGAU
(((..(((..((((((((...((....))...))))))))....(((((((((((..((((.........))))--------....))).))))))))----------...))))))... ( -23.50)
>DroEre_CAF1 3937 91 - 1
GCUAAAGCUUAAACUUGCGACACGCAAGUA--AUAAAUUCCUUGUAAAUGUGUUAAUUUUCAAAAGAUGCAGAU---------------------------AAAACAAAUUGCCAGCGUC
(((...((....(((((((...))))))).--.........((((...((((((...........)))))).))---------------------------))........)).)))... ( -14.40)
>DroYak_CAF1 1618 91 - 1
GCUAAAGUUGAAACUUGCGUCACGCAAGUA--ACAAAUUCCCUGUAAAUGUGUUAAUUUUCAAAAGAUGCAAAU---------------------------UGAACAAAUUGGCAGCGAC
.......(((..(((((((...))))))).--.)))..((.((((.(((.(((((((((.((.....)).))))---------------------------)).))).))).)))).)). ( -18.50)
>consensus
GCUAAACCUUAAACUUGCGUCACGCAAGUA__ACAAAUUCCUUGUAAAUGUGUUAAUUUUCAAAAAAUGCAAAA___________________________UGAACAAAUUGGCAGCGAC
(((..(((....(((((((...)))))))...................((((((...........))))))........................................))))))... (-12.54 = -12.35 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:03 2006