Locus 7800

Sequence ID 3R_DroMel_CAF1
Location 20,899,547 – 20,899,659
Length 112
Max. P 0.725179
window12580

overview

Window 0

Location 20,899,547 – 20,899,659
Length 112
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.73
Mean single sequence MFE -33.15
Consensus MFE -18.66
Energy contribution -19.38
Covariance contribution 0.73
Combinations/Pair 1.38
Mean z-score -1.79
Structure conservation index 0.56
SVM decision value 0.41
SVM RNA-class probability 0.725179
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20899547 112 - 27905053
AAACAAGUAUAAAAUUACCU-------UGCAGGCAGACUGGGAAACCCCCGCUUUACAUCGUGGUGGUCUCCUGCGGUCAGAGGGUGCAGGAGACUCUGGUUAUGAUUAAGUCAGCCAU
...((((((......)).))-------))..(((.(((((((.....))).......(((((..((((((((((((.(.....).)))))))))))...)..)))))..)))).))).. ( -38.90)
>DroSec_CAF1 944 112 - 1
AAACAAAUAUAAUAUUACCU-------UGCAGGCAGACUGGGAAACCGCCGCUUUACAUCGUGGUGGUCUGCUGCGGUCAGAGGGUCCAGGAGACUCUGGUUAUGAUCAAGUCGGCCAU
....................-------.((((.((((((((....))(((((........)))))))))))))))((((..((((((.....))))))(((....))).....)))).. ( -38.90)
>DroSim_CAF1 942 112 - 1
AAACAAAAAUAAUACUAACU-------UGCAGGCAGACUGGGAAACCGCCGCUUUACAUCGUGGUGGUAUGCUGCGGUCAGAGAGUCCAGGAGACUCUGGUUAUGAUCAAGUCGGCCAU
....................-------....(((.((((((.(.((((((((........)))))))).).))..(((((.((((((.....)))))).....))))).)))).))).. ( -36.70)
>DroEre_CAF1 4344 111 - 1
AAACAAACGUAAUAUUAU-U-------UGCAGGCAGACCGGGAAACCCCCACUUUACAUCGUGGUGGUCUGUUGCGGUCAGAGGGUUCAGGAGACUCUGGUUAUGAUCAAGUCGGCCAU
..................-.-------.((((.((((((((....)).((((........)))).))))))))))((((.(......)....((((.((((....)))))))))))).. ( -35.10)
>DroAna_CAF1 935 109 - 1
AUACAA---UUAUCCUAUUU-------UACAGACAAUCAUGGAAAACCCCGCUUUAUAUAGUGGUGGUUUGUUGUGGACAAAGGGUACAGGAGACCCUUGUUAUGAUCAAAUCAGCUAU
......---...........-------....((((..((..(.((((((((((......))))).))))).)..))(((((.((((.......))))))))).)).))........... ( -25.50)
>DroPer_CAF1 4880 119 - 1
AAUCUACUGUAUUAUAAUCUUUUAUUAAACAGACAACCUUCAAGAACGCCUCUCUACAUCGUUGUAGUCUGUUGUGGUCAACGAGUACAGGAGACACUUGUAAUGAUCAAAUCAGCAAU
......((((...((((....))))...))))(((((.....(((.......))).....))))).(.(((...((((((((((((...(....)))))))..))))))...))))... ( -23.80)
>consensus
AAACAAAUAUAAUAUUAUCU_______UGCAGGCAGACUGGGAAACCCCCGCUUUACAUCGUGGUGGUCUGCUGCGGUCAGAGGGUACAGGAGACUCUGGUUAUGAUCAAGUCAGCCAU
............................(((.(((((((((....)).((((........)))).))))))))))(((((.(((((.......))))).....)))))........... (-18.66 = -19.38 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:02 2006