| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 502,077 – 502,175 |
| Length | 98 |
| Max. P | 0.881851 |
| Location | 502,077 – 502,175 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 71.39 |
| Mean single sequence MFE | -27.77 |
| Consensus MFE | -13.86 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 502077 98 + 27905053 ------------GAGAAAGGGUAAAAGGGGAGAAAGGGGAAUUUUGA---AUGUGUGGCUUUUGCAUAUCGAUAUGCCUUUCCUUUCGGGCCCCGCCUCCAUUUCCAACCAUA ------------(.((((.((.....((((.((((((((....((((---.((((..(...)..))))))))....))...))))))...))))....)).)))))....... ( -29.00) >DroSec_CAF1 30214 98 + 1 ------------GAGAAAGGGUAAAAGGGGAGAAAGGGGCAUUUUUA---AUGUGUGGUUUUUGCAUAUCGAUAUGCCUUUCCUUUCUGGCCCCGCCUCCAUUUCCAACCAUA ------------(.((((.((.....((((((((((((((((..(..---(((((..(...)..)))))..).)))))...)))))))..))))....)).)))))....... ( -32.60) >DroSim_CAF1 30239 98 + 1 ------------GAGAAAGGGUAAAAGGGGAGAAAGGGGCAUUUUUA---AUGUGUGGUUUUUGCAUAUCGAUAUGCCUUUCCUUUCUGGCCCCGCCUCCAUUUCCAACCAUA ------------(.((((.((.....((((((((((((((((..(..---(((((..(...)..)))))..).)))))...)))))))..))))....)).)))))....... ( -32.60) >DroEre_CAF1 33479 98 + 1 ------------GAGAAAGGGUAAAAGGGAAGAAAGGGGCAUUUUUU---AUGUGUGGUUUUUGUACAUCGAUAUGCCUUUCCUUUUUGGCCCCUCCUACAUUUCCAAACUCA ------------(.((((..(((..((((.((((((((((((..((.---(((((..(...)..))))).)).)))))...)))))))...))))..))).)))))....... ( -27.30) >DroYak_CAF1 49829 101 + 1 ------------AAGAAAGGGUAAAAGGGGAGAAAAAGGCGUUUUUUUAAAUGUGUGGUUUUUGCAUAUCGAUAUGCCUUUCCUUUUUGGCUCCUCUUCCUUUUCCAAACACA ------------..(((((((...((((((((..((((((((.....(..(((((..(...)..)))))..).))))))))((.....)))))))))))))))))........ ( -30.10) >DroMoj_CAF1 34438 95 + 1 AGUUAACAAGCGCUGCUAGGU-AAAUAG--------CGG--UUUUUU---UAUUGCGGCUGGCUCAUGUUGAUAUAUAUAACUUAUCUCUCUCUCUCUC----UCUCGCCCUG .(((((((((((((((...((-(((...--------...--....))---))).)))))..)))..)))))))..........................----.......... ( -15.00) >consensus ____________GAGAAAGGGUAAAAGGGGAGAAAGGGGCAUUUUUA___AUGUGUGGUUUUUGCAUAUCGAUAUGCCUUUCCUUUCUGGCCCCGCCUCCAUUUCCAACCAUA ..................((((..(((((((.....((((((........(((((..(...)..)))))....)))))))))))))...)))).................... (-13.86 = -14.70 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:29 2006