Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 502,077 – 502,175 |
Length | 98 |
Max. P | 0.881851 |
Location | 502,077 – 502,175 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 71.39 |
Mean single sequence MFE | -27.77 |
Consensus MFE | -13.86 |
Energy contribution | -14.70 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.43 |
Mean z-score | -1.84 |
Structure conservation index | 0.50 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881851 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 502077 98 + 27905053 ------------GAGAAAGGGUAAAAGGGGAGAAAGGGGAAUUUUGA---AUGUGUGGCUUUUGCAUAUCGAUAUGCCUUUCCUUUCGGGCCCCGCCUCCAUUUCCAACCAUA ------------(.((((.((.....((((.((((((((....((((---.((((..(...)..))))))))....))...))))))...))))....)).)))))....... ( -29.00) >DroSec_CAF1 30214 98 + 1 ------------GAGAAAGGGUAAAAGGGGAGAAAGGGGCAUUUUUA---AUGUGUGGUUUUUGCAUAUCGAUAUGCCUUUCCUUUCUGGCCCCGCCUCCAUUUCCAACCAUA ------------(.((((.((.....((((((((((((((((..(..---(((((..(...)..)))))..).)))))...)))))))..))))....)).)))))....... ( -32.60) >DroSim_CAF1 30239 98 + 1 ------------GAGAAAGGGUAAAAGGGGAGAAAGGGGCAUUUUUA---AUGUGUGGUUUUUGCAUAUCGAUAUGCCUUUCCUUUCUGGCCCCGCCUCCAUUUCCAACCAUA ------------(.((((.((.....((((((((((((((((..(..---(((((..(...)..)))))..).)))))...)))))))..))))....)).)))))....... ( -32.60) >DroEre_CAF1 33479 98 + 1 ------------GAGAAAGGGUAAAAGGGAAGAAAGGGGCAUUUUUU---AUGUGUGGUUUUUGUACAUCGAUAUGCCUUUCCUUUUUGGCCCCUCCUACAUUUCCAAACUCA ------------(.((((..(((..((((.((((((((((((..((.---(((((..(...)..))))).)).)))))...)))))))...))))..))).)))))....... ( -27.30) >DroYak_CAF1 49829 101 + 1 ------------AAGAAAGGGUAAAAGGGGAGAAAAAGGCGUUUUUUUAAAUGUGUGGUUUUUGCAUAUCGAUAUGCCUUUCCUUUUUGGCUCCUCUUCCUUUUCCAAACACA ------------..(((((((...((((((((..((((((((.....(..(((((..(...)..)))))..).))))))))((.....)))))))))))))))))........ ( -30.10) >DroMoj_CAF1 34438 95 + 1 AGUUAACAAGCGCUGCUAGGU-AAAUAG--------CGG--UUUUUU---UAUUGCGGCUGGCUCAUGUUGAUAUAUAUAACUUAUCUCUCUCUCUCUC----UCUCGCCCUG .(((((((((((((((...((-(((...--------...--....))---))).)))))..)))..)))))))..........................----.......... ( -15.00) >consensus ____________GAGAAAGGGUAAAAGGGGAGAAAGGGGCAUUUUUA___AUGUGUGGUUUUUGCAUAUCGAUAUGCCUUUCCUUUCUGGCCCCGCCUCCAUUUCCAACCAUA ..................((((..(((((((.....((((((........(((((..(...)..)))))....)))))))))))))...)))).................... (-13.86 = -14.70 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:29 2006