Locus 7797

Sequence ID 3R_DroMel_CAF1
Location 20,892,607 – 20,892,715
Length 108
Max. P 0.516253
window12576

overview

Window 6

Location 20,892,607 – 20,892,715
Length 108
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 90.93
Mean single sequence MFE -24.53
Consensus MFE -17.54
Energy contribution -18.22
Covariance contribution 0.68
Combinations/Pair 1.07
Mean z-score -1.86
Structure conservation index 0.71
SVM decision value -0.03
SVM RNA-class probability 0.516253
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20892607 108 + 27905053
AAAGCCCUCAACAUGAGGAUGCGGUGGACACACUUUCACCAAACUAUGUGCUAUGUGUAAAGUGUUUUAACCAAGUUAUAU--AUAUUGGUGAAAGAUCAAUACAA-UUAU
...((((((.....))))..)).(((......((((((((((.........(((((((((..((.......))..))))))--))))))))))))).....)))..-.... ( -26.10)
>DroSim_CAF1 3905 108 + 1
AAAGCCCUCAACAUGAGGAUGCGGUGGACACACUUUCACCAAACCAUGUGCUAUGUGUAAAGUGUUUUAACCAUGUUAUAU--AUAUUGGUGAAAGAUCAAUACAA-UUAU
...((((((.....))))..)).(((......((((((((((.........(((((((((.(((.......))).))))))--))))))))))))).....)))..-.... ( -26.10)
>DroEre_CAF1 3953 108 + 1
AAAGCCCUCAACAUGAGGAUGCGGUGGACACACUUUCACCAAACCAUGUGCUAUGUGUAAAGUGUUUUAACCAAGUUAUAU--AUAUUGGUGAAAGAUCAAUACAA-UUAU
...((((((.....))))..)).(((......((((((((((.........(((((((((..((.......))..))))))--))))))))))))).....)))..-.... ( -26.10)
>DroYak_CAF1 3952 110 + 1
AAAGCCCUCAACAUGAGGAUGCGGUGGACACACUUUCACCAAACCAUGUGCUAUGUGUAAAGUGUUUUAACCAAGUUAUAUAUAUAUUGGUGAAAGAUCAAUACAA-UUAU
...((((((.....))))..)).(((......(((((((((......(((.(((((((((..((.......))..))))))))))))))))))))).....)))..-.... ( -25.60)
>DroAna_CAF1 3874 105 + 1
AAAGCCCUCAACAUGAGGAUGCACGGUAACCACUUUCACCAAAC-GUGUGCCUUGUGUAAUGCGUUUUAACCAAGUU---U--CUAUUAGUGUAAGAUAAAUACAAAUUAA
(((((.(...(((..(((.((((((..................)-))))))))..)))...).))))).........---.--......((((.......))))....... ( -18.77)
>consensus
AAAGCCCUCAACAUGAGGAUGCGGUGGACACACUUUCACCAAACCAUGUGCUAUGUGUAAAGUGUUUUAACCAAGUUAUAU__AUAUUGGUGAAAGAUCAAUACAA_UUAU
...((((((.....))))..))..........((((((((((...(((((.(.((..(((......)))..)).).))))).....))))))))))............... (-17.54 = -18.22 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:57 2006