| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,891,979 – 20,892,099 |
| Length | 120 |
| Max. P | 0.848003 |
| Location | 20,891,979 – 20,892,099 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.39 |
| Mean single sequence MFE | -43.42 |
| Consensus MFE | -37.89 |
| Energy contribution | -38.62 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20891979 120 - 27905053 AAGUAAAACGCCUUGCAGCCCUUAUCGUAGACAUCCUUCCAGCCCGCCUCCAGUGGAUACUUCCGCAGCAAUCUCUUGUAGCGCUUGAGAUACCUAUGGCUGGGCUGCGAAAGCGGCGAG ........(((((((((((((...((((((..(((..((.(((((((.....))))........((.((((....)))).))))).)))))..))))))..)))))))))....)))).. ( -42.50) >DroSec_CAF1 3286 120 - 1 AAGUAAAACGCCUUGCAGCCCUUAUCGUAGAUAUCCUUCCAGCCCGCCUCCAGUGGAUACUUCCGCAGCAAUCUCUUGUAGCGCUUGAGAUACCUAUGGCCGGGCUGCGAGGGCGGUGAG ........(((((((((((((...((((((.((((..((.(((((((.....))))........((.((((....)))).))))).)))))).))))))..))))))).))))))..... ( -46.40) >DroSim_CAF1 3301 120 - 1 AAGUAAAACGCCUUGCAGCCCUUAUCGUAGAUAUCCUUCCAGCCCGCCUCCAGUGGAUACUUCCGCAGCAAUCUCUUGUAGCGCUUGAGAUACCUAUGGCCGGGCUGCGAGAGCGGCGAG ........(((((((((((((...((((((.((((..((.(((((((.....))))........((.((((....)))).))))).)))))).))))))..)))))))))).)))..... ( -46.40) >DroEre_CAF1 3360 120 - 1 AAGUAGUACGCCUUGCAGCCCCUAUCAUAGAUAUCCUUCCAGCCCGCCUCCAGUGGAUACUUUCGCAGCAAUCUCUUGUAGCGCUUGAGAUACCUAUGGCCGGGUUGCGAGUGCGGGGCG .....((.(((((((((((((...((((((.((((..((.(((((((.....))))........((.((((....)))).))))).)))))).))))))..)))))))))).)))..)). ( -45.80) >DroYak_CAF1 3336 120 - 1 AAGUAGUACGCCCUGCAGCCCUUAUCGUAGAUAUCCUUCCAGCCCGCCUCCAGUGGAUAUUUUCGCAGCAAUCUCUUGUAGCGCUUGAGAUACCUAUGGCCGGGUUGCGAGUGCGGGGCG ........(((((((((.....((((...))))..(((.(((((((...(((..((.(((((((((.((((....)))).)))...))))))))..))).))))))).)))))))))))) ( -44.00) >DroAna_CAF1 3204 120 - 1 AAGUAGUAGGCUUGGCAGCCUUUGUCAUAGACAUCCUUCCAGCUCGACUCCAGAGGAUAUUUGCGCAACAACCUCUUGUAGCGCUUCAGAUACUUUUGGCUGGGCUGCAAGUUCGGAGAG .......(((((....))))).((((...))))..(((.(((((((...(((((((.(((((((((.((((....)))).))))...)))))))))))).))))))).)))......... ( -35.40) >consensus AAGUAAAACGCCUUGCAGCCCUUAUCGUAGAUAUCCUUCCAGCCCGCCUCCAGUGGAUACUUCCGCAGCAAUCUCUUGUAGCGCUUGAGAUACCUAUGGCCGGGCUGCGAGUGCGGCGAG ........(((((((((((((...((((((.((((..((.(((((((.....))))........((.((((....)))).))))).)))))).))))))..)))))))))).)))..... (-37.89 = -38.62 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:56 2006