Locus 7795

Sequence ID 3R_DroMel_CAF1
Location 20,891,221 – 20,891,337
Length 116
Max. P 0.820382
window12574

overview

Window 4

Location 20,891,221 – 20,891,337
Length 116
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 90.98
Mean single sequence MFE -25.71
Consensus MFE -20.55
Energy contribution -22.51
Covariance contribution 1.96
Combinations/Pair 1.06
Mean z-score -1.70
Structure conservation index 0.80
SVM decision value 0.68
SVM RNA-class probability 0.820382
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20891221 116 - 27905053
AUUUUGUGCCCCUGAGACGUAUGGUCAUAUUAUUUUCAGCUGCUCGAAUAAUAUUUCAGGUCAGCUCAAUUUGACUGAUUAUUAUUA-AAUUGAACAGCAAUAUGGCCGAUAACGCA
...............(.(((.((((((((((.......((((.((((((((((..((((.((((......)))))))).))))))..-..)))).))))))))))))))...)))). ( -27.01)
>DroSec_CAF1 2523 116 - 1
AUUUUGUGCCCCUGAGACGUACGGUCAUAUUAUUUUCAGCUGCUCGAAUAAUAUUUCAGGUCAGCUCAAUUUGACUGAAUAUUAUUA-AAUAAAACAACAAUAUGGCCGAUAACGCG
...............(.(((.((((((((((...............((((((((((..((((((......)))))))))))))))).-...........))))))))))...)))). ( -23.83)
>DroSim_CAF1 2538 117 - 1
AUUUUGUGCCCCUGGUACUUACGGUCAUAUUAUUUUCAGCUGCUCGAAUAAUAUUUCCGGUCAGCUCAAUUUGACUGAAUAUUAUUAAAAUAAAACAACAAUAUGGCCGAUAACGCG
.....(((((...)))))...((((((((((...............(((((((((..(((((((......)))))))))))))))).............))))))))))........ ( -28.29)
>DroEre_CAF1 2600 116 - 1
AUUUUGUGCCCUUGGCCCGUACGGUCAUAUUAUUUUCAGCUGCUCGAAUAAUAUUUCAGGUCAUAUAAAUUGGACUGAAUAUUAGUA-AAUAAAACAACAAUAUGGCCGAUAACGCA
.....(.(((...))).)...((((((((((...(((........)))(((((((.(((..((.......))..))))))))))...-...........))))))))))........ ( -24.20)
>DroYak_CAF1 2551 116 - 1
AUUUUGAGCCCCAGGCCCGUACGGUCAUAUUAUUUUCAGCUGCUCGAAUAAUAUUUCAGGUCAUAUAAAUUUGACUGAAUAUUAUUA-AAUUCAACCACAAUAUGGCCGAUAACGCA
.....(.(((...))).)...((((((((((...............((((((((((..(((((........))))))))))))))).-...........))))))))))........ ( -25.23)
>consensus
AUUUUGUGCCCCUGGCACGUACGGUCAUAUUAUUUUCAGCUGCUCGAAUAAUAUUUCAGGUCAGCUCAAUUUGACUGAAUAUUAUUA_AAUAAAACAACAAUAUGGCCGAUAACGCA
.....(((((...)))))...((((((((((...............((((((((((..((((((......)))))))))))))))).............))))))))))........ (-20.55 = -22.51 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:55 2006