| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,876,713 – 20,876,814 |
| Length | 101 |
| Max. P | 0.858039 |
| Location | 20,876,713 – 20,876,814 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.33 |
| Mean single sequence MFE | -20.00 |
| Consensus MFE | -14.60 |
| Energy contribution | -14.93 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.858039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20876713 101 + 27905053 ----AAACCACUUCCGCCAAUGGUCGAAAUCGCCGUCGCCAUCUCGACAUUUAGCUAGCC---A--------UAUAGCAAAUGUCUUUACAUAUCAUACCGAUAUAAUAGAAACCA ----...........((..((((.((....)))))).))..(((.(((((((.((((...---.--------..))))))))))).....(((((.....)))))...)))..... ( -20.60) >DroSim_CAF1 6556 100 + 1 ----AAACCACUUCCGCCAAUGGUCGAAAUCGCCGUCGCCAUCUCGACAUUUAGCUAGCC---A--------UAUAGCAAAUGUCU-UACAUAUCAUACCGAUAUAAUAGAAACCA ----...........((..((((.((....)))))).))..(((.(((((((.((((...---.--------..))))))))))).-...(((((.....)))))...)))..... ( -20.60) >DroYak_CAF1 4701 105 + 1 CUGAAAACCACUUCCGCCAACGGUCGACAUCGCC-----CA--UCGACAUUUAGCUAGCAUGUAUAGCGAAUGAUAGCAAAUGUCU-UACAUAUCAUACCGAUAG---AGAAACCA ...........(((.......((.((....)).)-----).--(((((((((.((((.(((.........))).))))))))))).-....((((.....)))))---)))).... ( -18.80) >consensus ____AAACCACUUCCGCCAAUGGUCGAAAUCGCCGUCGCCAUCUCGACAUUUAGCUAGCC___A________UAUAGCAAAUGUCU_UACAUAUCAUACCGAUAUAAUAGAAACCA .....................((.((....)))).........(((((((((.((((.................))))))))))).....(((((.....)))))....))..... (-14.60 = -14.93 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:54 2006