Locus 7789

Sequence ID 3R_DroMel_CAF1
Location 20,861,616 – 20,861,710
Length 94
Max. P 0.920129
window12557

overview

Window 7

Location 20,861,616 – 20,861,710
Length 94
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 84.84
Mean single sequence MFE -52.48
Consensus MFE -40.37
Energy contribution -41.02
Covariance contribution 0.65
Combinations/Pair 1.26
Mean z-score -3.45
Structure conservation index 0.77
SVM decision value 1.13
SVM RNA-class probability 0.920129
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20861616 94 + 27905053
UGCGGCCCGCCGUCGUGUCGUCUGGCGUUCGGUGGCCCAAAUGGACCGGCAUUGGUCGCUGGACGUGGGGCGGCAUGGUGGACAGG---CUGCUGGG
.((((((.(((..((((((((((.(((((((((((((..((((......))))))))))))))))).))))))))))..)).).))---)))).... ( -58.90)
>DroSec_CAF1 246 94 + 1
UGCGGCCCGCCGUCGUGUCGUCUGGCGUUCGGUGGGCCAAAUGAACCGGCAUUGGUCGCAGGACGCGGGGCGGCAUGGUGGACAGG---CUGCUGGG
.((((((.(((..((((((((((.((((((.((((.((((.((......)))))))))).)))))).))))))))))..)).).))---)))).... ( -54.20)
>DroSim_CAF1 1697 94 + 1
UGCGGCCCGCCGUCGUGUCGUCUGGCGUUCGGUGGGCCAAAUGGACCGGCAUUGGUCGCAGGACGCGGGGCGGCAUGGUGGACAGG---CUGCUGGG
.((((((.(((..((((((((((.((((((.((((.((((.((......)))))))))).)))))).))))))))))..)).).))---)))).... ( -54.30)
>DroEre_CAF1 2413 94 + 1
UGCGGACCGCCGUCGUGCCGUCUGGCGUUCGGUGGCCCAAAUGGGCCGGCAUUGGUCGCUGGACGUGGGGCGGCAUGGUGGACAGG---CUGCUGGG
.((((.((.((..((((((((((.((((((((((((((....)))))(((....)))))))))))).))))))))))..))...))---)))).... ( -61.50)
>DroYak_CAF1 1687 94 + 1
UGCGGCCCGCCGUCGUGUCGUCUGGCGUUCGGUGGCCCAAAUGGACCGGCAUUGGUAGCUGGACGUGGGGCGGCAUGGUGGACAGG---CUGCUGGG
.((((((.(((..((((((((((.(((((((((.(((..((((......))))))).))))))))).))))))))))..)).).))---)))).... ( -54.30)
>DroAna_CAF1 2388 97 + 1
UGUGCGGGGGCCUCUGGCCUCCUGGAGUUUGGUGGCACGAAAGGACCAGCAUUGUUCGUUGGACGUGGGCUUGCAUAAUGUGUCGGAUACUGUUGCG
((((((((((((...)))))))..(((((((.(((..(....)..))).)...(((.....)))..)))))))))))..(((.(((...))).))). ( -31.70)
>consensus
UGCGGCCCGCCGUCGUGUCGUCUGGCGUUCGGUGGCCCAAAUGGACCGGCAUUGGUCGCUGGACGUGGGGCGGCAUGGUGGACAGG___CUGCUGGG
.((((.((.((..((((((((((.(((((((((((.((((.((......))))))))))))))))).))))))))))..))...))...)))).... (-40.37 = -41.02 +   0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:39 2006