| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,857,070 – 20,857,181 |
| Length | 111 |
| Max. P | 0.559735 |
| Location | 20,857,070 – 20,857,181 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 85.11 |
| Mean single sequence MFE | -32.20 |
| Consensus MFE | -22.03 |
| Energy contribution | -22.03 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.73 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20857070 111 + 27905053 UUUAGCUUACUCUUCUUCUGGGAGACACUGGACAUUUGUAGAAUCCUCUACAAAACCAGCCAGCAGCUGGUUCGUUUUCUUCAUCAUGAGUCCAAAGAAUGAGUUGGCAAA ....(((.(((((((((...(....)..(((((.((((((((....))))))))((((((.....))))))..................)))))))))).)))).)))... ( -37.30) >DroGri_CAF1 1433 111 + 1 UACCACUUACUCUUUAUCUGUGAAAGACUCUAAUUCGGUCGAAUCCUCCGUGAGACUGGCCAGCAAUUGAUUCACCUUACUCAGCAUUAGGCCAAAGAAUGAGUUGGCAAA ..(((((((.(((((.(((.....)))(((.....(((.........))).)))...((((.....((((..........)))).....))))))))).)))).))).... ( -21.50) >DroSec_CAF1 1573 111 + 1 UUUAGCUUACUCUUCUUCUGGAAGACACUGGACAUUUGUGGAAUCCUCUACAAAACCAGCCAGCAGCUGGUUCGUUUUCUUCAUCAUGAGUCCAAAGAAUGAGUUGGCAAA ....(((.(((((((((.((((...((.(((...((((((((....))))))))((((((.....))))))............)))))..))))))))).)))).)))... ( -34.50) >DroSim_CAF1 1565 111 + 1 UUUAGCUUACUCUUCUUCUGGAAGACACUGGACAUUUGUGGAAUCCUCUACAAAACCAGCCAGCAGCUGGUUCGUUUUCUUCAUCAUGAGUCCAAAGAAUGAGUUGGCAAA ....(((.(((((((((.((((...((.(((...((((((((....))))))))((((((.....))))))............)))))..))))))))).)))).)))... ( -34.50) >DroEre_CAF1 1575 111 + 1 UUUAACUUACUCUUCUUCUGGAAGACACUGAAUGUUUGUAGAGUCCUCAACAAAACCAGCUAGCAGCUGGUUCGUUUUCUUCAUCAUGAGUCCAAAGAAUGAGUUGGCGAA .....((.(((((((((.((((...((.(((....((((.((....)).))))(((((((.....)))))))...........)))))..))))))))).)))).)).... ( -28.10) >DroYak_CAF1 1586 111 + 1 UUCAGCUUACUCUUCUUCUGGAAGACACUGGAUGUUUGUAGAGUCUUCCACAAAACCAGCCAGCAGCUGGUUUGUUUUCUUCACCAUGAGCCCAAAGAAUGAGUUGGCAAA ....(((.(((((((((.((((((((.(((.(....).))).))))))))..((((((((.....))))))))(..(((........)))..).))))).)))).)))... ( -37.30) >consensus UUUAGCUUACUCUUCUUCUGGAAGACACUGGACAUUUGUAGAAUCCUCUACAAAACCAGCCAGCAGCUGGUUCGUUUUCUUCAUCAUGAGUCCAAAGAAUGAGUUGGCAAA ....(((.(((((((((.((((...((.(((...(((((.((....)).)))))((((((.....))))))............)))))..))))))))).)))).)))... (-22.03 = -22.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:38 2006