Locus 7787

Sequence ID 3R_DroMel_CAF1
Location 20,850,689 – 20,850,802
Length 113
Max. P 0.764978
window12555

overview

Window 5

Location 20,850,689 – 20,850,802
Length 113
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 82.49
Mean single sequence MFE -24.24
Consensus MFE -15.50
Energy contribution -16.06
Covariance contribution 0.56
Combinations/Pair 1.23
Mean z-score -2.03
Structure conservation index 0.64
SVM decision value 0.51
SVM RNA-class probability 0.764978
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20850689 113 - 27905053
CAAAAACUAUUUAUCCUGCAAAAACCGCUAGUGAAUUUUUACAGUGCAUAGUUAUCGGCACCAAUCGAUAACACAAUCGGCACACAAUCGAAGUUCACAGCCU-AGGAAUAUUU
.............(((((........(((.(((((((((....((((...((((((((......)))))))).(....)))))......)))))))))))).)-))))...... ( -25.60)
>DroSec_CAF1 1742 112 - 1
CAAAGAAUAUUUAUCCUGAAAAAAUCGCUAGUGAAUUUUCCCAGUGCAUAGUUAUCGGCACCAAUCGAUAACGCAAUCGACAUACAAUCGAAUUUCACAGCCG-GGG-AGAUUU
................................((((((((((.(.((...((((((((......))))))))....((((.......))))........))))-)))-)))))) ( -23.50)
>DroSim_CAF1 1933 112 - 1
CAAAGAAUAUUUAUACUGAAAAAAUCGCUAGUGAAUUUUCCCAGUGCAUAGUUAUCGGCACCAAUCGAUAACGCAAUCGACAUACAAUCGAAUUUCACAGCCG-GGG-AGAUUU
................................((((((((((.(.((...((((((((......))))))))....((((.......))))........))))-)))-)))))) ( -23.50)
>DroEre_CAF1 1590 113 - 1
CAAAAAAUAUAUACCAUGCAAAAACCGCAAGUAAAUUUUUACAGUGCACAGCUAUCGGCACCAAUCGAUAGCACAGUCGACAUACAAUCGAUGUCCACAGUCUGAGG-AGAAUU
...........(((..(((.......))).)))..((((..(((.((...((((((((......))))))))...((.(((((.......))))).)).)))))..)-)))... ( -23.80)
>DroYak_CAF1 1590 106 - 1
-------UAUAUAUCAUGCAAAAGCAGCGAGUGAAUUUUCUCAGUGCAUAACUAUCGACACCAAUCGAUAACACCAUCGACAUACAAUCGAAGUUCACCGUCUGAGG-AGAUUU
-------......((.(((....)))..))..((((((((((((((...((((.((((......(((((......))))).......))))))))...)).))))))-)))))) ( -24.82)
>consensus
CAAAAAAUAUUUAUCCUGCAAAAACCGCUAGUGAAUUUUCACAGUGCAUAGUUAUCGGCACCAAUCGAUAACACAAUCGACAUACAAUCGAAGUUCACAGCCU_AGG_AGAUUU
..........................(((.(((((((.............((((((((......))))))))....((((.......))))))))))))))............. (-15.50 = -16.06 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:37 2006