| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,846,569 – 20,846,689 |
| Length | 120 |
| Max. P | 0.505158 |
| Location | 20,846,569 – 20,846,689 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.89 |
| Mean single sequence MFE | -43.47 |
| Consensus MFE | -36.14 |
| Energy contribution | -36.70 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.505158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20846569 120 - 27905053 CAGAAGCCGGAGAUGGGCUCCUCGUGGCAGCCGGCAAUUGGCGGCGGGCACGAUUGCUGCAGGCAGAUGAUGUCGCUUCGGAAGCAGAAGCAGAAGUCGCAGGGAUCGUCACGUGGAAUC .....(((.......)))(((.((((((.((((.(....).))))..))((((((.((((.((((.....))))(((((.......))))).......)))).)))))))))).)))... ( -51.70) >DroVir_CAF1 47246 120 - 1 CAGAAGCCAGAAAUUGGCUCCUCAUGACAGCCAGCAAUUGGUGGCGGGCAAGAUUGCUGCAAGCAGAUGAUGUCGCUUCUGAAGCAGAAGCAGAAAUCGCAAGGAUCGUCGCGUGGGAUC ....((((((...)))))).((((((.(.((((((((((..((.....)).))))))))...)).((((((...(((((((...))))))).....((....)))))))))))))))... ( -40.80) >DroGri_CAF1 71064 120 - 1 CAGAAGCCAGAGAUUGGCUCCUCGUGGCAGCCAGCAAUUGGUGGCGGACAAGAUUGCUGCAAGCAGAUGAUGUCGCUUCUAAAGCAGAAGCAGAAGUCACAAGGAUCGUCACGUGGUAUU ....((((((...))))))((.((((((.((((.(....).))))......((((.(((....))).((((.((((((((.....)))))).)).))))....)))))))))).)).... ( -41.60) >DroWil_CAF1 20568 120 - 1 CAGAAUCCAGAGAUUGGUUCUUCGUGACAGCCGGCAAUUGGAGGUGGGCAAGAUUGUUGCAGGCAGAUGAUAUCACUUCUGAAGCAGAAACAGAAGUCGCAGGGAUCGUCGCGUGGUAUU .((((.((((...)))))))).((((((.(((.((........)).)))..((((.((((.....(((...)))(((((((.........))))))).)))).))))))))))....... ( -36.60) >DroYak_CAF1 55848 120 - 1 CAGAAGCCGGAGAAGGGCUCCUCGUGGCAGCCGGCGAUUGGCGGCGGGCACGAUUGCUGCAAGCAGAUGAUGUCGCUUCGGAUUCAGAAGCAGAAGUCGCAGGGAUCGUCACGUGGAAUC .....(((.......)))(((.((((((.(((.((........)).)))..((((.((((..(((.....))).(((((.......))))).......)))).)))))))))).)))... ( -47.60) >DroMoj_CAF1 58564 120 - 1 CAGAAGCCAGUGAUUUGCUCCUCGUGACAGCCAGCUAUUGGUGGCGGACAAGAUUGUUGCAAGCAGAUGAUGUCGCUUCUGAAGCAGAAGCAGAAGUCGCAAGGAUCGUCGCGUGGGAUU ......((((((((..(.((((.(((((.((((.(....).)))).((((...((((.....))))....))))(((((((...)))))))....))))).)))).)))))).))).... ( -42.50) >consensus CAGAAGCCAGAGAUUGGCUCCUCGUGACAGCCAGCAAUUGGUGGCGGGCAAGAUUGCUGCAAGCAGAUGAUGUCGCUUCUGAAGCAGAAGCAGAAGUCGCAAGGAUCGUCACGUGGAAUC ....((((.......))))((.((((((.((((.(....).))))......((((.((((.....(((...)))(((((((...))))))).......)))).)))))))))).)).... (-36.14 = -36.70 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:35 2006