Locus 7784

Sequence ID 3R_DroMel_CAF1
Location 20,845,517 – 20,845,615
Length 98
Max. P 0.587236
window12552

overview

Window 2

Location 20,845,517 – 20,845,615
Length 98
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 91.62
Mean single sequence MFE -33.12
Consensus MFE -23.12
Energy contribution -25.00
Covariance contribution 1.88
Combinations/Pair 1.06
Mean z-score -2.50
Structure conservation index 0.70
SVM decision value 0.11
SVM RNA-class probability 0.587236
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20845517 98 - 27905053
ACUGGAGCAGGAAUC---UUUUCAUCAUCAAGAGGAGCUGCUGUGGAUGGAAUCUUCUCCUCAUCAAGAGGAGCCGCAGUAGUUUGGAUCUUGUCUUCAUC
..((((((((((..(---((((.......)))))((((((((((((..........((((((.....))))))))))))))))))...))))).))))).. ( -35.80)
>DroSec_CAF1 61378 98 - 1
ACUGGAGCAGGAAUC---UUGUCAUCAUCAAGAGGAGCUGCUGUGGAUGGGAUCUUCUCCUCAUCAAGAGGAGCCGCAGUAGUUGGAAUCUUGUCUUCAUC
..((((((((((.((---(((.......)))))..(((((((((((..........((((((.....)))))))))))))))))....))))).))))).. ( -37.70)
>DroEre_CAF1 58745 101 - 1
ACUGGAUCAUGAAUCCUCUUAUCAUCAUCAAGAGGAGCUGCUGUGGAUGGGAUCUUCUCCUCAUCAAGAGCAGCCUCAGUAGUUGGGAUCUUGUCUUCAUC
((.(((((.....(((((((.........)))))))((((((.(.(((((((.....))).)))).).))))))............))))).))....... ( -32.40)
>DroYak_CAF1 54841 98 - 1
ACUGGAGCAGAAAUC---UUUUCAUCAUCAAGAGGAGCAGCUGUGGAUGGAAUCUUCUCCUCAUCCAGAGCAGCCUCAGUAGCUGGGAUCUUGUCUUCAUC
..(((((((((..((---((((........))))))((.(((.(((((((..........))))))).))).))(((((...))))).)).)).))))).. ( -26.60)
>consensus
ACUGGAGCAGGAAUC___UUUUCAUCAUCAAGAGGAGCUGCUGUGGAUGGAAUCUUCUCCUCAUCAAGAGCAGCCGCAGUAGUUGGGAUCUUGUCUUCAUC
..(((((..((((......)))).....(((((..(((((((((((..........((((((.....)))))))))))))))))....))))).))))).. (-23.12 = -25.00 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:34 2006