Locus 7783

Sequence ID 3R_DroMel_CAF1
Location 20,845,317 – 20,845,437
Length 120
Max. P 0.687079
window12551

overview

Window 1

Location 20,845,317 – 20,845,437
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.25
Mean single sequence MFE -49.10
Consensus MFE -33.74
Energy contribution -34.18
Covariance contribution 0.44
Combinations/Pair 1.24
Mean z-score -2.00
Structure conservation index 0.69
SVM decision value 0.32
SVM RNA-class probability 0.687079
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20845317 120 - 27905053
UCGCUGUAGCUGGGAUUUCGUCGGCAUCCUGGGGAGCCUCUGAGCUCGGAGUCUUAUCAGAAUCCUGGGGAGCCGGGGAAACUGGAGUCUUUUCAGCAUCCUGAGGAGACACAGUAACGG
...((((.((((((.((((.(((((.((((.((((..(((((....)))))(((....))).)))).))))))))).))))))...((((((((((....)))))))))).)))).)))) ( -52.90)
>DroSec_CAF1 61178 120 - 1
UCGCUGUAGCUGGGAUUUCGUCGGCAUCCUGGGGAGCCUCUGAGCUCGGAGUCUUAUCAGAAUCCUGGGGAGCCGCGGAAACUGGAGUCUUGUCAGCAUCCUGAGGAGACACAGUAACGG
...((((.((((((.(((((.((((.((((.((((..(((((....)))))(((....))).)))).))))))))))))).))...(((((.((((....)))).))))).)))).)))) ( -51.70)
>DroEre_CAF1 58545 120 - 1
UCGCUGUAGCUGGGAUUUCGUCGGCAUCCUGGGGAGCCUCGGAGAUCGGAGUCUUAUCAGAAUCCUGGGGAGCCUCGGAAACUGGAGUCUUGUCAGCAUCCUGAGGAGACGCAGUAACGC
..(((((..(..(..(((((..(((.((((.((((..((..(((((....)))))...))..)))).))))))).))))).)..).(((((.((((....)))).))))))))))..... ( -47.40)
>DroYak_CAF1 54641 120 - 1
CCGCUGUAGCUGGGAUUUCGUCGGCAUCCUGGGGAGCCUCUGAGAUCGGAGUCUUAUCAGAAUCCUGGGGAGCCGCGGAAACUGGAGUCUUGUCAGCAUCCUGAGGAGACACAGUAACGG
...((((.((((((.(((((.((((.((((.((((..((.((((((....))))))..))..)))).))))))))))))).))...(((((.((((....)))).))))).)))).)))) ( -51.70)
>DroAna_CAF1 55095 120 - 1
CUGCGGUAGCAGGAGUCUUUUCAUCCUCCUGGGGCGCAACAGUGACUGGAGUUUUGUCAGCGUCUUGAGGUGCCACUGAAAUGGGAGUCUUCUCAGCAUCCUGAGGAGCCACAGUGACUG
.((((.(..((((((..........)))))).).)))).((((.((((..(((((.((((.((.((((((.((..((.....))..))..)))))).)).)))))))))..)))).)))) ( -41.80)
>consensus
UCGCUGUAGCUGGGAUUUCGUCGGCAUCCUGGGGAGCCUCUGAGAUCGGAGUCUUAUCAGAAUCCUGGGGAGCCGCGGAAACUGGAGUCUUGUCAGCAUCCUGAGGAGACACAGUAACGG
...((((.((((.(((((((..(((..(....)..)))..)))))))...(((((.((((.((.((((.((((((.(....))))...))).)))).)).)))).))))).)))).)))) (-33.74 = -34.18 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:33 2006