Locus 7782

Sequence ID 3R_DroMel_CAF1
Location 20,843,320 – 20,843,436
Length 116
Max. P 0.589795
window12550

overview

Window 0

Location 20,843,320 – 20,843,436
Length 116
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 86.93
Mean single sequence MFE -35.70
Consensus MFE -23.75
Energy contribution -25.62
Covariance contribution 1.88
Combinations/Pair 1.10
Mean z-score -1.74
Structure conservation index 0.67
SVM decision value 0.11
SVM RNA-class probability 0.589795
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20843320 116 + 27905053
AGAUAUCUUUGAAGAGGAAGCGCCUGUUGCGGUUACCACCGCAGCUCCAUCAAAGGACGACGGUGAGCAGAAGCCAGUCGAAGUUGAAGAGAAACCGAUCGAAGAUGGACAAAAGC
...(((((((((...((........((((((((....))))))))(((.((((....(((((((........))).))))...)))).).))..))..)))))))))......... ( -34.70)
>DroSec_CAF1 59166 116 + 1
AGAUAUCUUUGAAGAGGAGGUGCCUGCUGCGGUUACCACCGCUGCUCCAUCGAAGGACGACGGUAAACAGAAGCCAGUCGAAGUUGAAGAGCAACCGAUCGAAGAUGGACAAAAGC
...(((((((((..((.((....)).))(((((....)))))(((((..((((....(((((((........))).))))...)))).))))).....)))))))))......... ( -35.50)
>DroEre_CAF1 56602 116 + 1
AGAUAUCUUUGAAGCGGAAGUGCCUGCCGUGGUUACCACCGCUGCUCCGUCGAAGGACGAGGAUGAACAGAAACCAGUCGACGAUGGAGAGAAACCAAUCGAAGAUGCACAAAAGC
.(.((((((((((((((..(((((......)).)))..))))).((((((((...(((..((...........)).)))..)))))))).........))))))))))........ ( -37.20)
>DroYak_CAF1 52707 116 + 1
AGAUAUCUUUGAAGAGGAAUUGCCCGCCGCGGUUACCACCGCUGCUCCAUCGAAGGUCGAGGAUGAACAGAAACCCGUCGACGAUGGAGAGAAACAGUUCGAAGAUGGUAAAAAGC
...((((((((((..((......))((.(((((....))))).))(((((((..((.((.((...........))))))..))))))).........))))))))))......... ( -35.40)
>consensus
AGAUAUCUUUGAAGAGGAAGUGCCUGCCGCGGUUACCACCGCUGCUCCAUCGAAGGACGACGAUGAACAGAAACCAGUCGAAGAUGAAGAGAAACCGAUCGAAGAUGGACAAAAGC
...(((((((((...((...........(((((....)))))..((((((((...(((...(((........))).)))..)))))))).....))..)))))))))......... (-23.75 = -25.62 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:32 2006