Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,685,987 – 2,686,094 |
Length | 107 |
Max. P | 0.676491 |
Location | 2,685,987 – 2,686,094 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.11 |
Mean single sequence MFE | -37.94 |
Consensus MFE | -25.53 |
Energy contribution | -27.34 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.25 |
Mean z-score | -2.25 |
Structure conservation index | 0.67 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2685987 107 - 27905053 GACUCCUCCGGAGGUCGUCUCAAUGGGUGGAUAUAGCGUUUCGUCCUUGG-------------AUCGGCACCAAUCAAAGUCAAGGAUGCCGAAACGCUGUGCUACUUUUGAGAUAUCCU ((((((...))).)))(((((((.((((((.((((((((((((((....)-------------)).((((((............)).))))))))))))))))))))))))))))..... ( -43.20) >DroSec_CAF1 45391 107 - 1 GACUCCUCCGGAGGUCAUCUCAAUGGGUGGAUAUAGCGUUUCGUCCUUGG-------------AUCGGCACCAAUCAAAGUCAAGGAUGCCGAGACGCUGUGCUGCUUUUCAGAUUUCCU .........(((((((........(((..(.((((((((((((((....)-------------)).((((((............)).))))))))))))))))..)))....))))))). ( -36.60) >DroSim_CAF1 38544 107 - 1 GACUCCUCCGGAGGUCAUCUCAAUGGGUGGAUAUAGCGUUUCGUCCUUGG-------------AUCGGCACCAAUCAAAGUCAAGGAUGCCGAGACGCUGUGCUGCUUUUCAGAUUUCCU .........(((((((........(((..(.((((((((((((((....)-------------)).((((((............)).))))))))))))))))..)))....))))))). ( -36.60) >DroEre_CAF1 39375 107 - 1 GACUCCUCCGGAGGUCAGCUCAAUGGGUGGAUAUAGCGAUUCGUCCUUGG-------------AUCGGCACCAAUCAAAGUCAAGGAUGCUGAGGUGCUGUGCUGCUUUUGAGAUUUCCU .....(((.(((((.((((((((.((..((((......))))..))))))-------------..(((((((..(((..(((...)))..)))))))))).))))))))))))....... ( -32.70) >DroYak_CAF1 46396 107 - 1 GACUUCUCCGGAGGUCAUCUCAAUGGGUGGAUAUAGCGUUUCGUCCUUGG-------------AUCGGCAUCAAUCCAAGUCAAGGAUGAUGAGACGCUGUGCUGCUUUUGAGAUUUCCU ((((((....))))))(((((((.(((..(.(((((((((((((((((((-------------((........)))))))........)))))))))))))))..))))))))))..... ( -45.80) >DroAna_CAF1 32580 108 - 1 GACGCCGCUCGAGGUCAUCUCAUCA------------ACUUCGACCUUGGGCAGCCAGACCCGAUCGGUACCAAUCAAAGUCAAGGAUGCCGGAACGCUGUGCUCCUUUUCAGAACUUCU (((((.((((((((((.........------------.....)))))))))).)).......(((.(....).)))...)))(((((.(((((....))).)))))))............ ( -32.74) >consensus GACUCCUCCGGAGGUCAUCUCAAUGGGUGGAUAUAGCGUUUCGUCCUUGG_____________AUCGGCACCAAUCAAAGUCAAGGAUGCCGAGACGCUGUGCUGCUUUUCAGAUUUCCU .........(((((((........((((((.(((((((((((((((((((..............................)))))))...))))))))))))))))))....))))))). (-25.53 = -27.34 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:54 2006