| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,830,400 – 20,830,503 |
| Length | 103 |
| Max. P | 0.836914 |
| Location | 20,830,400 – 20,830,503 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 72.17 |
| Mean single sequence MFE | -16.77 |
| Consensus MFE | -11.04 |
| Energy contribution | -11.85 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.836914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20830400 103 + 27905053 UCCAGCUCCAGCUUCCACAUCAACUUCAACUCCAAGUCCAAUUGACU-CUUGGCCAUAAAUAAGCAU-UUAUGCUAAGCGGCCAGACGACUUUCCUUUCAUUUAA ...(((....)))....................(((((...(((.((-((((((.((((((....))-)))))))))).)).)))..)))))............. ( -15.90) >DroSim_CAF1 45672 95 + 1 --------CAGCUCCCACUUCAACUUCAACUCCAAGUCCAAUUGACU-CUUGGCCAUAAAUAAGCAU-UUAUGCUAAGCGGCCAGACGACUUUCCUUUCAUUUCA --------.........................(((((...(((.((-((((((.((((((....))-)))))))))).)).)))..)))))............. ( -14.40) >DroEre_CAF1 43635 97 + 1 --CAACUCCAGUGCAAGCUCCAACUCCAACCCGAAGUCCACUUGGCU-CUUGGCCAUAAAUAAGCAU-UUAUGCUAAGCGGCCAGACGACUUUCCUUUCAU---- --..............................((((((...((((((-((((((.((((((....))-)))))))))).))))))..))))))........---- ( -22.80) >DroWil_CAF1 4195 91 + 1 AUGAC------------CGUGAAGUUUACCUCCACCUUCU-UUCAUUCUUUGGCCAUAAAUAAACGUUUUAUGCUAAGCGGUUCGACGACUUUCCUUUCCUUUA- ..(((------------(((((((...........)))).-........(((((.(((((.......)))))))))))))))).....................- ( -14.00) >consensus __CA____CAGCUCCCACUUCAACUUCAACUCCAAGUCCAAUUGACU_CUUGGCCAUAAAUAAGCAU_UUAUGCUAAGCGGCCAGACGACUUUCCUUUCAUUUA_ .................................(((((...((((((.((((((.((((.........)))))))))).))))))..)))))............. (-11.04 = -11.85 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:27 2006