| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,830,165 – 20,830,259 |
| Length | 94 |
| Max. P | 0.626445 |
| Location | 20,830,165 – 20,830,259 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 83.27 |
| Mean single sequence MFE | -38.86 |
| Consensus MFE | -26.02 |
| Energy contribution | -28.06 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20830165 94 + 27905053 AGCCGGAGAUCACGAACUUGCGGGCCAACCCGCACGAACCCCA-AAGAACGGGUCUGUCUGGGAUUUGGGAUUUGGGGUUUGGG---------------GCUUGGGAUAC ..((.(((..(.......((((((....))))))(((((((((-((...(((((((.....)))))))...)))))))))))).---------------.))).)).... ( -41.10) >DroSec_CAF1 45710 100 + 1 AGCCGGAGAUCACGAACUUGCGGGCCAACCCGCACGAACCCCA-AAGAACGGGUCUGUCUGGGAUUUGGGAUU-GGGGUUUGGGUUUUC--------GAUUUUGGAUUCC ...(.((((((..(((((((((((....))))))(((((((((-(....(((((((.....)))))))...))-)))))))))))))..--------)))))).)..... ( -40.00) >DroSim_CAF1 45443 100 + 1 AGCCGGAGAUCACGAACUUGCGGGCCAACCCGCACGAACCCCA-AAGAACGGGUCUGUCUGGGAUUUGGGAUU-GGGGUUUGGGUUUUC--------GGUUUUGGAAUCC (((((((((((.......((((((....))))))(((((((((-(....(((((((.....)))))))...))-)))))))))))))))--------))))......... ( -44.50) >DroEre_CAF1 43436 95 + 1 AGCCGGAGAUCACGAACUUGCGGGCCAACCCGCACGAACCCCAAAAGAACGGGCCUGUCUGGGAUUUGGGACUGGGG---------------CUUGGGGCUUUGGAAUCC ..((((((........(.((((((....)))))).)..(((((........(((((((((.(....).))))..)))---------------)))))))))))))..... ( -33.40) >DroYak_CAF1 39639 110 + 1 AGCCGGAGAUCACGAACUUGCGGGCCAACCCGCACGAACCCCAAAAGAACGGCUAUGUCUGGGAUUUGGGAUUUGGGAUUUGGGACUUAGAGAUUGGGGCUUUGGGAUCC ..((((((........(.((((((....)))))).)..((((((........(((.((((.((((((.(....).)))))).)))).)))...))))))))))))..... ( -35.30) >consensus AGCCGGAGAUCACGAACUUGCGGGCCAACCCGCACGAACCCCA_AAGAACGGGUCUGUCUGGGAUUUGGGAUU_GGGGUUUGGG__UU_________GGCUUUGGAAUCC ..((((((..........((((((....))))))((((((((.......(((((((.....)))))))......)))))))).................))))))..... (-26.02 = -28.06 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:26 2006