Locus 7773

Sequence ID 3R_DroMel_CAF1
Location 20,817,540 – 20,817,632
Length 92
Max. P 0.571509
window12537

overview

Window 7

Location 20,817,540 – 20,817,632
Length 92
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 84.41
Mean single sequence MFE -22.47
Consensus MFE -12.85
Energy contribution -13.10
Covariance contribution 0.25
Combinations/Pair 1.06
Mean z-score -2.26
Structure conservation index 0.57
SVM decision value 0.08
SVM RNA-class probability 0.571509
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20817540 92 + 27905053
AGUGACCCAAAUUCGUGGUCUUUCUUGACUCUUGUUUUCUUCCGAUUUACAUUCCAACACACACACACACCG----AUUGCGAUCGAUUGUGGGUU
...((((((...((((((((......)))...(((..((....))...)))......)))...........(----((....)))))...)))))) ( -16.90)
>DroSec_CAF1 33168 93 + 1
---GACCCAAAUUCGUGGUCUUUCUUGACUCUUGUUUUCUUCUGAUUUACAUUCCAACACACACACACACCGAUCGAUUCCGAUCGGUUGUGGGUU
---(((((......((((((......)))...(((..((....))...)))......)))....(((.((((((((....)))))))))))))))) ( -27.70)
>DroSim_CAF1 33084 93 + 1
---GACCCAAAUUCGUGGUCUUUUUUGACUCUUGUUUUCUUCUGAUUUACAUUCCAACACACACACACACCGAUCGAUUGCGAUCGGUUGUGGGUU
---(((((......((((((......)))...(((..((....))...)))......)))....(((.((((((((....)))))))))))))))) ( -27.50)
>DroEre_CAF1 30949 82 + 1
AGUGACCCAAAUUCGGGGAC----GUAACUCUUGUUUUCUUCUGAUUUACAUUCCAACACACAC----------CGAUUGCGAUCGACUGUGGGUU
...((((((...(((((((.----((((.((............)).)))).)))).........----------((....))..)))...)))))) ( -17.80)
>consensus
___GACCCAAAUUCGUGGUCUUUCUUGACUCUUGUUUUCUUCUGAUUUACAUUCCAACACACACACACACCG__CGAUUGCGAUCGAUUGUGGGUU
...((((((...(((.((((......))))..(((..((....))...))).................................)))...)))))) (-12.85 = -13.10 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:21 2006