Locus 7771

Sequence ID 3R_DroMel_CAF1
Location 20,815,712 – 20,815,827
Length 115
Max. P 0.888571
window12534

overview

Window 4

Location 20,815,712 – 20,815,827
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 90.87
Mean single sequence MFE -34.34
Consensus MFE -28.52
Energy contribution -30.24
Covariance contribution 1.72
Combinations/Pair 1.14
Mean z-score -1.68
Structure conservation index 0.83
SVM decision value 0.95
SVM RNA-class probability 0.888571
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20815712 115 - 27905053
UUGGCUGCUUGGCUACUUGGCCAUUUUGCUACUUGGCUACUUGGCUACUUGGGCGUAAUGCGAGACAAGUGUCGUCGCUUAGUCGUAAUGUGCUUAGUUGCGCUUACUUUCUUUG
..(((((((((((((..((((((..........))))))..))))))....))).....(((((((....))).))))..))))((((.((((......))))))))........ ( -36.70)
>DroSec_CAF1 31383 107 - 1
UUAGCUGCUUGGCUACUUGGCCAUUUUGCUACUUG--------GCUACUUGGGCGUAAUGCGAGACAAGUGUCGUCGCUUAGUCGUAAUGUGCUUAGUUGCGCUUACUUUCUUUG
.((((....(((((....)))))....))))...(--------((((....((((....((((.(....).)))))))))))))((((.((((......))))))))........ ( -31.20)
>DroSim_CAF1 31306 115 - 1
UUGGCUGCUUGGCUACUUGGCCAUUUUGCUACUUGGCUACUUGGCUACUUGGGCGUAAUGCGAGACAAGUGUCGUCGCUUAGUCGUAAUGUGCUUAGUUGCGCUUACUUUCUUUG
..(((((((((((((..((((((..........))))))..))))))....))).....(((((((....))).))))..))))((((.((((......))))))))........ ( -36.70)
>DroEre_CAF1 29126 114 - 1
UUUGCUGCUUGGCUACUUGGCCAUCUUGCCACUUGGCUACUUGG-UACUUGGGCGUAAUGCGAGACAAGUGUCGUCGCUUGGUCGUAAUGUGCUUAGUUGCGCUUACUUUCUUUG
......((.((((((..((((......))))..))))))....(-((.(((((((((.(((((..((((((....)))))).))))).))))))))).)))))............ ( -35.40)
>DroYak_CAF1 24722 107 - 1
UUGGCCAUUUUGCUACUUGGC--------UACUUGGCUACUUGGAUACUUGGGCGUAAUGCGAGACAAGUGUCGUCGCUUAGUCGUAAUGUGCUUAGUUGCGCUUACUUUCUUUG
.((((((....(((....)))--------....))))))....((((((((..((.....))...))))))))...........((((.((((......))))))))........ ( -31.70)
>consensus
UUGGCUGCUUGGCUACUUGGCCAUUUUGCUACUUGGCUACUUGGCUACUUGGGCGUAAUGCGAGACAAGUGUCGUCGCUUAGUCGUAAUGUGCUUAGUUGCGCUUACUUUCUUUG
.((((((..((((((..((((......))))..))))))..))))))....(((.(((.(((((((....))).))))))))))((((.((((......))))))))........ (-28.52 = -30.24 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:18 2006