| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,813,686 – 20,813,790 |
| Length | 104 |
| Max. P | 0.873746 |
| Location | 20,813,686 – 20,813,790 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.87 |
| Mean single sequence MFE | -19.32 |
| Consensus MFE | -6.52 |
| Energy contribution | -6.96 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20813686 104 - 27905053 UGCAGACAA-AACCCAAUGUCAAAAUUUGCUCUGCCCCCUCAGCUCCAUGCCCCCUUUUUGGAAAUUGUCUAUAAAUCACACUAUUUCCGACCA--GGACACCCA-AC .((((((((-(..............)))).))))).......((.....))..(((..((((((((.((...........)).))))))))..)--)).......-.. ( -17.54) >DroSec_CAF1 29389 96 - 1 UGCAGACAA-AACCCAAUGUCAAAAUUUGCCCUGCUCCCUCUGCG--------CC-UUUUGGAAAUUGUCUAUAAAUCACACUAUUUCCGACCA--GGACACUCUUAC .(((((((.-.......)))).......((...))......)))(--------((-(.((((((((.((...........)).))))))))..)--)).)........ ( -14.40) >DroSim_CAF1 29301 104 - 1 UGCAGACAA-AACCCAAUGUCAAAAUUUGCCCAGCUCCCUCUGCUCCAUGCUCCC-UUUUGGAAAUUGUCUAUAAAUCACACUAUUUCCGACCA--GGACACUCUUAC .(((((((.-.......))))...........(((.......)))...)))..((-(.((((((((.((...........)).))))))))..)--)).......... ( -16.50) >DroEre_CAF1 27116 101 - 1 UGCAGACAAAAAGCCAAUGUCAAAAUUUGCUCUGCUCCCUUUU---CCUGCC-CC-CUUUGGAAAUUGUCUAUAAAUCACACUAUUUCCGAGCA--GGACACUCUUAC .(((((((((...............)))).))))).......(---(((((.-..-..((((((((.((...........)).)))))))))))--)))......... ( -21.76) >DroAna_CAF1 23934 94 - 1 UGCAGACAA-A---CUCUGUCAAAAUUUGC-CGGCUCCGUCCGGCAGGAGUUGUA-CAACAGAAUUUGUCUAUAAAUCACACUAUUUCCGACCAAAGGCC-------- ...((((((-(---.((((((((..(((((-(((......))))))))..)))..-..))))).)))))))................((.......))..-------- ( -26.40) >consensus UGCAGACAA_AACCCAAUGUCAAAAUUUGCCCUGCUCCCUCUGCU_CAUGCC_CC_UUUUGGAAAUUGUCUAUAAAUCACACUAUUUCCGACCA__GGACACUCUUAC ....((((.........)))).....................................((((((((.((...........)).))))))))................. ( -6.52 = -6.96 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:17 2006