Locus 7768

Sequence ID 3R_DroMel_CAF1
Location 20,812,407 – 20,812,514
Length 107
Max. P 0.862790
window12530

overview

Window 0

Location 20,812,407 – 20,812,514
Length 107
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.90
Mean single sequence MFE -27.22
Consensus MFE -17.84
Energy contribution -19.03
Covariance contribution 1.20
Combinations/Pair 1.10
Mean z-score -1.99
Structure conservation index 0.66
SVM decision value 0.84
SVM RNA-class probability 0.862790
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20812407 107 - 27905053
GACUUUCGCUUUAAUUUUGUUGUAAGCAAAUUAAUUUUUAUUAAUUGGCAGCCGUAAAGAUUAAAGC-GGCUUAUGCAGCCG-CUUCACUGCAGUGACCCCUUCCCCCG
.......((((((((((((((((.....(((((((....))))))).)))))....)))))))))))-((((.....)))).-..((((....))))............ ( -25.50)
>DroPse_CAF1 22314 105 - 1
GGCUCCUGCUUCAAUUUGGUUGUAAGCAAAUUAAUUUUCAUUAAUUGGCGGCCGUAAAGAUUAAAGC-GGCUUAUGCAGGCAAAGUCACUGCAGUUCCUCAUCC---CU
((...((((.....((((.(((((.((.(((((((....))))))).))((((((..........))-))))..))))).))))......))))..))......---.. ( -27.40)
>DroEre_CAF1 25777 103 - 1
GACUUUCGCUUUAAUUUGGUUGUAAGCAAAUUAAGUUUUAUUAAUUGGCGGCCGUAAAGAUUAAAGC-GGCUUAUGCAGGCG-CUCGACUGCAGUGACCCCUUCC----
.......((((((((((((((((.....((((((......)))))).)))))))....)))))))))-((.((((((((...-.....))))).))).)).....---- ( -27.90)
>DroYak_CAF1 21306 99 - 1
GACUUUCGCUUUAAUUUGGUUGUAAGCAAAUUAAUUUUUAUUAAUUGGCAGCCGUUAAGAUUAAAGC-GGCUUAUGCAGGCG-CUGGACUC-------UCCUCCC-CCU
......(((((((((((((((((.....(((((((....))))))).)))))))....)))))))))-)((....))(((.(-..((....-------.))..).-))) ( -27.40)
>DroAna_CAF1 22928 87 - 1
UGCUCUGGCUUUAAUAUUGUUGUAAGCAAAUUAAUUUUUAUUAAUUGGCUGCCGUAAAGAUUAAAGCCGGCUUAUGCAGGCA-----ACUGC-----------------
....(((((((((((.....((..(((.(((((((....))))))).)))..)).....))))))))))).....((((...-----.))))----------------- ( -29.00)
>DroPer_CAF1 21618 105 - 1
GGCUCCUGCUUCAAUUUGGUUGUAAGCAAAUUAAUUUUCAUUAAUUGGCGGCCGUAAAGAUUAAAGC-GGCUUAUGCAGGCAAAGUCACUGCAGUUUCUCAUCC---CU
.....((((.....((((.(((((.((.(((((((....))))))).))((((((..........))-))))..))))).))))......))))..........---.. ( -26.10)
>consensus
GACUCUCGCUUUAAUUUGGUUGUAAGCAAAUUAAUUUUUAUUAAUUGGCGGCCGUAAAGAUUAAAGC_GGCUUAUGCAGGCA_CUUCACUGCAGU__CUCCUCC___CU
....((.((((((((((((((((.....(((((((....))))))).)))))))....))))))))).))....(((((.........)))))................ (-17.84 = -19.03 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:14 2006